Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1542 ATGCTTGATACTGGTAACTTTGTTCTTGAAAATAGGAATCAAAATCTTACAGTGTGGCAGAGCTTCCAGAATCCAGCCAACACCATCTTGCCAACTCAAACACTGGAAATCGGTGGCACCATGTATTCTCAGCAGTCAAACAGCAGCTACTCAAAGGGGAGGTTCCAGCTTCAAATGAAAGCTGGTGGCAATCTCGTACTTAATACCTTGGACCCAGAATCTGGTAAAGCATATGATGTTTATTATTCAATTTACACCAGTGATGCTGCAAATAGCAGCAATTCTGGCCTACGGTTGATTTTTGATGAGTCAGGTGGCATCTATGTTCTTCTAAGGAATGGAGGTACTGTTAACATCACCTCCGGAAGTAGCTTGACGGGAGATTACTATTACCGGGCAACGCTTGACCAGGACGGAGTTTTCAGGCTATATAATCGTGACAACAGCAGTACTTCTTGGTCTGTTGTGAAAAACATTCCTGATAACATTTGTACCGTGACCCCAAGTAATCTTGGCAGTGGAATTTGTGGGTTCAACAGCTATTGTTCCATTGATGGAAGGGGGCTGCCTGATTGTCTATGCCCAGATGGGTACTCTCATTTGGATCCTCTTGACAGAAAACAAGGCTGTAAACCGAATTTTGAATTGCCCAGCTGCCAAACAGCTGTTGATGGATGGGAAGCAGACAAGGATGCAGTAGATTTCAGAGAATTAAAAGATGTCAACTGGCCATTATCTGATTATCAACTTCAGGAGGGACCTGAATTCAACAAGGAGAAGTGTAAACAGTCTTGCAAAGATGATTGCCTCTGTGTGGTTGCTATCTATAACACTGAGAATCAGTGTTGGAAGAAGAAGTTTCCTCTCTCAAATGGAAGACACGAACCTACACAAAATGTGCTCCAATACACAACTGCTCTCATCAAGGTACGGATTAAAAATGATACTATAGAGAGATGCCCAGACAAGTCTACCTTGATCCTTGTTGGGTCAGTACTCCTTGGCAGCTCTGTGTTCTTTAATCTCTTTCTGTTGTTAGCAATCCCTGCGGCTGCTCTCTTCTTCTACAACAAGAAACTGATGAATATCCAGTCCGTTTCAAGCAAATTCCCGACCACCAGTGTGAGAACTTATTCATACAAAGAGCTTGAAGAGGCAACCGGTGGATTCAAGGAGAAATTGGGCAGGGGAGCTTTTGGAACAGTTTATAAAGGGGTTTTGGCATCAGATGCTGGGAGATTTGTGGCAGTCAAGAAATTAGATAAGGTGGTACAGGAAGGCGAGAAGGAATTCAAAACAGAAGTCACTGTGATTGGGCAGACCCACCATAGGAATTTGGTCAGTTTGCTTGGCTATTGTGATCAGGGTGTGCACCGGCTTCTGGTATACGAGTACATGAACAATGGATCTTTAGCAGACTTGTTGTTTGGAATATCTACACCTGACTGGAGCCAAAGACTACAGATAGCCTTTAAGATTGCAAAAGGGCTAATGTATTTACACGAAGAGTGCAGCACCCCCATCATCCATTGTGATATAAAGCCTGAAAACATCCTCCTTGACGAGTACCTTACACCTAGGATTTCAGACTTCGGACTAGCAAAGCTTCTGATAAGAGATCATACTCGGACCCTTACAACCATCAGAGGGACCAAAGGATACGTTGCACCAGAATGGTTCAGGAGCAAGCCGATTACGGCGAAAGTGGATGTTTATAGTTATGGGGTTATGTTACTGGAGATCATCAGTTGCAGGAAGAGCGTACATTCACAGCCGGAAAATGAGGAGGAAGCAATACTTGCTGATTGGGCTTATGATTGCTATAGAGGCCACAGATTGGATAAGCTAGTGAAGAATGATGATGAAGCAGGAAAGGACATGGGGATGCTGGAGAGGGTAGTGATGGTTGCCATTTGGTGCATTCAAGAGGACCCTTCTTTGAGGCCCTCCATGGGAATGGTCATACTGATGCTTCAAGGAGTTGTTGAAGTTCCTGTGCCCCCTTGTCCTTTCCCCTTTAGTTCAACCTTCTGA 2034 0.4415 MLDTGNFVLENRNQNLTVWQSFQNPANTILPTQTLEIGGTMYSQQSNSSYSKGRFQLQMKAGGNLVLNTLDPESGKAYDVYYSIYTSDAANSSNSGLRLIFDESGGIYVLLRNGGTVNITSGSSLTGDYYYRATLDQDGVFRLYNRDNSSTSWSVVKNIPDNICTVTPSNLGSGICGFNSYCSIDGRGLPDCLCPDGYSHLDPLDRKQGCKPNFELPSCQTAVDGWEADKDAVDFRELKDVNWPLSDYQLQEGPEFNKEKCKQSCKDDCLCVVAIYNTENQCWKKKFPLSNGRHEPTQNVLQYTTALIKVRIKNDTIERCPDKSTLILVGSVLLGSSVFFNLFLLLAIPAAALFFYNKKLMNIQSVSSKFPTTSVRTYSYKELEEATGGFKEKLGRGAFGTVYKGVLASDAGRFVAVKKLDKVVQEGEKEFKTEVTVIGQTHHRNLVSLLGYCDQGVHRLLVYEYMNNGSLADLLFGISTPDWSQRLQIAFKIAKGLMYLHEECSTPIIHCDIKPENILLDEYLTPRISDFGLAKLLIRDHTRTLTTIRGTKGYVAPEWFRSKPITAKVDVYSYGVMLLEIISCRKSVHSQPENEEEAILADWAYDCYRGHRLDKLVKNDDEAGKDMGMLERVVMVAIWCIQEDPSLRPSMGMVILMLQGVVEVPVPPCPFPFSSTF* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1542 677 Pfam Protein kinase domain 391 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1542 677 SUPERFAMILY Protein kinase-like (PK-like) 366 658 IPR011009 -
Vvi13g1542 677 FunFam Serine/threonine-protein kinase 26 167 - -
Vvi13g1542 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Vvi13g1542 677 CDD STKc_IRAK 394 660 - -
Vvi13g1542 677 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 666 - -
Vvi13g1542 677 ProSiteProfiles Protein kinase domain profile. 388 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1542 677 ProSitePatterns Protein kinases ATP-binding region signature. 394 419 IPR017441 GO:0005524
Vvi13g1542 677 Gene3D Phosphorylase Kinase; domain 1 353 465 - -
Vvi13g1542 677 FunFam S-receptor-like serine/threonine-protein kinase 357 465 - -
Vvi13g1542 677 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 40 IPR036426 -
Vvi13g1542 677 SMART serkin_6 388 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1542 677 Gene3D - 25 169 - -
Vvi13g1542 677 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 672 - -
Vvi13g1542 677 Gene3D Transferase(Phosphotransferase) domain 1 466 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1542 Vvi-Chr13 24230556 24232589 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1542 377 664 Receptor kinase-like Gene Family AT1G56120 45.392 5.25e-67 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi13g1542 Pkinase 2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1542 - - vvi:100261425 1327.77