Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1525 ATGAATACTAAGAAGATTGATGTAGTTCAGAATCAAAACACTGGATCATTCAACTGTTATTCTGGGAAAGGTATTTTTTCCCGGCAGCCATGGAAGATGGGATTTTGTTTCCAGCCTGATCAGTTGCCGGCCTCAGAGGGAGGCTCCACCCAGCAGATAATCAACTTGGGGAGTACTCCTACCACCATTGCTGGCCATTTCGGGTGTCCAGCAGCTTCTGCCTTTTATGCAACTGAATTCTACATGGGGTTTCCAGAATGTGATTCCTATCCTGCTGATTCAGTAACCTCATCATACCCATCTTCTAAATTTGATCCAGCAGGTTCTCAATCAAAGGATACTCAGAACCTTCCCAGCTGTGAAAATCAAAATTCCACTAGAACCCCATATCGAAATTCACAGGTTTGTGACATCTTGTTCATCAAGTCTGACGTTGAAGATGCGCAGCCCTACAGAATTCTTCGGGAAAATCAGAATCAAAGAATTGAACCCAGCTCTAGATTTCAACTAAGGAGGCAGCCTGCAAATCCTTCTCATAATACTACTTCTTTCGCTTCAAACAAGACGCGGATTAGATGGACTCAAGATCTTCACAAGCGATTTGTTGAGTCTGTAAATTGTCTAGGGGGAGCTGAAAAGGCAACTCCAAAGGGAATCCTTAGGCTGATGGGCTCTGAGGGACTGACCATCTTCCAAATCAAAAGTCACTTGCAGAAGTATCGTATTGCAAGGCACCTACCAGGATCAACAGAAGAAAAATCTGAGAAGGGAACTTGTGCAGATTTCATAACAAAGTTTGACCCCGAAACAGGCTTGCGGGTAGCAGAAGCACTGCAACTGCAACTAGAAGTCCAGACGCGTCTCCATGAACAATTAGAGATTCAAAGAAATTTACAGATGCAGATTGAAGAACAAGGGAAGCAGCTGAAGAAGATGCTGGACAGCAACAGAATCCAAATAAGACCCTGA 969 0.4386 MNTKKIDVVQNQNTGSFNCYSGKGIFSRQPWKMGFCFQPDQLPASEGGSTQQIINLGSTPTTIAGHFGCPAASAFYATEFYMGFPECDSYPADSVTSSYPSSKFDPAGSQSKDTQNLPSCENQNSTRTPYRNSQVCDILFIKSDVEDAQPYRILRENQNQRIEPSSRFQLRRQPANPSHNTTSFASNKTRIRWTQDLHKRFVESVNCLGGAEKATPKGILRLMGSEGLTIFQIKSHLQKYRIARHLPGSTEEKSEKGTCADFITKFDPETGLRVAEALQLQLEVQTRLHEQLEIQRNLQMQIEEQGKQLKKMLDSNRIQIRP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1525 322 FunFam Two-component response regulator 185 246 - -
Vvi13g1525 322 Pfam Myb-like DNA-binding domain 192 241 IPR001005 -
Vvi13g1525 322 Gene3D - 187 245 - -
Vvi13g1525 322 Pfam MYB-CC type transfactor, LHEQLE motif 273 316 IPR025756 -
Vvi13g1525 322 MobiDBLite consensus disorder prediction 159 183 - -
Vvi13g1525 322 SUPERFAMILY Homeodomain-like 186 242 IPR009057 -
Vvi13g1525 322 NCBIfam myb-like DNA-binding domain, SHAQKYF class 188 242 IPR006447 GO:0003677
Vvi13g1525 322 Coils Coil 275 295 - -
Vvi13g1525 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 184 315 IPR044848 GO:0003700
Vvi13g1525 322 MobiDBLite consensus disorder prediction 98 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1525 Vvi-Chr13 24084318 24095927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1525 129 314 G2-like Transcription Factor Family AT4G28610 44.149 2.66e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi13g1525 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1525 - - vvi:100242570 632.484