Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1522 ATGAGCAAAAACACACCAATCATCAACGTCAGTAACGACGACAACAACATCATCATCGACATGGCTAGAACAGAGAAAAGAGATAACGATACCTGGACGACTTGGGAGGAGCTGTTGCTAGCATGCGCGGTGAAGCGGCACGGCTTCCAGAACTGGGATTCAGTTGCCATGGAAATACAGACTCGAAGCTCTCTTCCTCACCTTTTGACGACCGCTCAGAACTGTCAGCAGAAATATCACGACCTCAAACGTAGATTCACGGCCACGGCCAAAGACAACGACGCCGAGACCCAAAGCCAAAACCAAGTCCGCGACGAAACCGATACGATTCCATGGTTAGAAGAGTTGAGGAAGCTCCGAGTTGCAGAGCTTAGAAACGAGGTCCATCGTTCTGATGTTTCGATCCTTTCGTTGCAGTTGAAGGTGAAGAGATTAGAAGAGGAGCGGGAGCAGTCCACGAAGGAGAATGACAACGACGTCGTAAAACCAGATCTGGACGATGAGGTAAAGGAGGAGAGATCTAAAGACGAAGTAAAGGAAGGAGACGAAGTGCCGGAAAAATCCTCTCCCGAAGGAGACGCCGGAAAGTTGATCTCCGGCGAGGAATCCGACCGGGAAAACCGGTCGGTCAACGAGTCGAACTCGACCGGAGTGAAGGGCGAGAATATAGAAACCGCTGTGGAAGAGGCAGCGAGAGAACCGGAACCAACAGAGCCCGGTTCGACAAAACCGGATCCTGTTTCCAGCGATTCGAAACCGGTCGGAGAAGACTCGTACAATGGAAGCTCCGAGCCGAACCGGGCCAAAAAAGCCGATGACTCGTCCGAGTTAAGAGAATCGGCGGCTCACTCAAAGGACGGGACAAAGGAGAGCAGCGACGTGCAAAGCTCAGCCAGCCTTACGAGAAAGAGGAAGCGTCGCCGCAAAAAGGAAATCTCCGGCAGTAGCTCCGGCGATGAGCCGGAGACCGAAGCGGTATCTCCGGCGACCAAGCGGATCTGCGTGAAATCACAGCCATTGGTTAGCTTTTTGGAGATTATCCGGTCGCACAAACACAGCTCCTTGTTCGAGCGCCGGCTCGAAACCCAGGAGACGGAGGTATACAAAAGCATTGTTAGGCAGCACGTGGACCTCGAGTCCATACAGACCAAGCTGGACGATGGCACTTACTCCTCTTCCCCACGAGCGTTTTACAGAGACCTCCTCCTCCTTTTCACTAACGCCATTGTCTTTTTTCCCAAGGCTTCGGCGGAGGCCCTGGCTGCCGGAGAACTGCGGGCAATGGTCTTGAATGAAGTTCGCAAGCAGCAACCCCCGGCGCCCGAACATCTCCTACTGCCCCAACCCAAACCGGAGCTTGAAAGATCGGATTCCTTGCTTGCGAAGCAAAAGTCGTCCGCTCCCATTATTGTCTGCCGCAAACGGAGCTCTATCTCGGCCAAGGCTTCCAGTTTTGGGGTGAAGGCGGGGGAGTCCAGGAGTGAAGAGAAACCAGCTGTGGATATCAAACCGTCGGTGAGGGAAGAGCAGAGTTTGGTGAAAGCCGGCACAAAGGAGAAGTCGACAACTGGTGTGAGAAGCTTGAGGAGAGGCGGGAAGAACCGGTCGGGTAATCTCAATAAGAATCAAAGCACAAGCACCAATCATGGGTCGTCGGATAAAGGAGAGACGCCCAAAGCAGAAAAAAAGAAAGCTGATGCCTCTGCTTCCGCCAAAAAACGGGGTGCGGCGGACTTCTTGAAGAGGATTAAGAAGAACTCGCCCATGGACATGGGGAAGAGTACGGTGAATGACACGAGGAGTGGCAGAGGAGGGGGAGGTGGGGAGGAAAAGAGGAAGCGGAATGAGAAGGGAGATGGGAGGAGAGACAGAGTGTTGAGGCAGAGTGGGGGAGGGAAGCAAGGCAAGGACGAGAGCAGCCCATCAAAACGGAGTGTAGGGCGGCCGCCAAAGAAAGCGGCCGCAGACACAGGGAAGCGAGGGAGGGAGAGTGGCGGCGAGAAGGAAGCGGCGCCGGCAGCATCATCATCAAAGAGGGCAAGGAAGCAGGCCAGGAGGTGA 2061 0.5425 MSKNTPIINVSNDDNNIIIDMARTEKRDNDTWTTWEELLLACAVKRHGFQNWDSVAMEIQTRSSLPHLLTTAQNCQQKYHDLKRRFTATAKDNDAETQSQNQVRDETDTIPWLEELRKLRVAELRNEVHRSDVSILSLQLKVKRLEEEREQSTKENDNDVVKPDLDDEVKEERSKDEVKEGDEVPEKSSPEGDAGKLISGEESDRENRSVNESNSTGVKGENIETAVEEAAREPEPTEPGSTKPDPVSSDSKPVGEDSYNGSSEPNRAKKADDSSELRESAAHSKDGTKESSDVQSSASLTRKRKRRRKKEISGSSSGDEPETEAVSPATKRICVKSQPLVSFLEIIRSHKHSSLFERRLETQETEVYKSIVRQHVDLESIQTKLDDGTYSSSPRAFYRDLLLLFTNAIVFFPKASAEALAAGELRAMVLNEVRKQQPPAPEHLLLPQPKPELERSDSLLAKQKSSAPIIVCRKRSSISAKASSFGVKAGESRSEEKPAVDIKPSVREEQSLVKAGTKEKSTTGVRSLRRGGKNRSGNLNKNQSTSTNHGSSDKGETPKAEKKKADASASAKKRGAADFLKRIKKNSPMDMGKSTVNDTRSGRGGGGGEEKRKRNEKGDGRRDRVLRQSGGGKQGKDESSPSKRSVGRPPKKAAADTGKRGRESGGEKEAAPAASSSKRARKQARR* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1522 686 MobiDBLite consensus disorder prediction 483 686 - -
Vvi13g1522 686 MobiDBLite consensus disorder prediction 604 667 - -
Vvi13g1522 686 MobiDBLite consensus disorder prediction 490 515 - -
Vvi13g1522 686 SUPERFAMILY Homeodomain-like 27 85 IPR009057 -
Vvi13g1522 686 CDD SANT 31 83 IPR001005 -
Vvi13g1522 686 ProSiteProfiles Bromodomain profile. 348 419 IPR001487 GO:0005515
Vvi13g1522 686 MobiDBLite consensus disorder prediction 266 290 - -
Vvi13g1522 686 MobiDBLite consensus disorder prediction 146 190 - -
Vvi13g1522 686 Pfam Myb-like DNA-binding domain 31 82 IPR001005 -
Vvi13g1522 686 CDD Bromodomain 340 433 - -
Vvi13g1522 686 Gene3D - 24 82 - -
Vvi13g1522 686 ProSiteProfiles Myb-like domain profile. 24 83 IPR001005 -
Vvi13g1522 686 MobiDBLite consensus disorder prediction 225 239 - -
Vvi13g1522 686 Coils Coil 135 162 - -
Vvi13g1522 686 MobiDBLite consensus disorder prediction 146 330 - -
Vvi13g1522 686 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 28 682 - -
Vvi13g1522 686 SMART bromo_6 131 438 IPR001487 GO:0005515
Vvi13g1522 686 Pfam Bromodomain 347 421 IPR001487 GO:0005515
Vvi13g1522 686 Gene3D - 329 439 IPR036427 GO:0005515
Vvi13g1522 686 MobiDBLite consensus disorder prediction 516 553 - -
Vvi13g1522 686 MobiDBLite consensus disorder prediction 242 265 - -
Vvi13g1522 686 SMART sant 28 85 IPR001005 -
Vvi13g1522 686 SUPERFAMILY Bromodomain 336 440 IPR036427 GO:0005515
Vvi13g1522 686 MobiDBLite consensus disorder prediction 554 588 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi13g1522 Bromodomain 3.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1522 - - vvi:100263099 1191.02