Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1520 ATGGAGGTCGGAGGCAAGAGGAGAGGTCGTCCGGACGGCGCCGCTTTCGGCAACGGAGGCTTCAAGAAATCCAAGCAAGAAACGGAGTCCTTTTCAACTGGTATAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTTCTGGATGCCCGTTTGGTGAGGGATGTCACTTCCTGCATTACGTTCCTGGTGGCTATAGTGCAGTGACACAGATGACAAACCTGGGTGGAAATCCTGCTATGCCTCCCATTGCGAGAAATCCCATGGCCCCACCAACAATTCCTGATGGCCCTCCTACTGTCAAAACTCGGATCTGCAACAAATTCAACACTCCAGAGGGATGTAAGTTTGGTGACAAATGCCATTTTGCTCATGGTGAATTGGAGCTTGGCAGGCCAATTGTCCCAACCCATGAAGATCCCAGAGCAATGGGACCAATGGGTGGCAGGTTAGCTGGACGGCTTGAGGCACCGCCACCAGGCCTGGCTGCTGCAGCCAGCTTTGGTGCATCAGCTACTGCCAAGATCAGTGTGGATGCATCTCTTGCAGGAGCCATCATTGGAAAAGGTGGGGTAAACTCAAAGCAGATTTGTCGCCTCACTGGTGTCAAGCTTTCCATAAAGGAGCATGAATCAGACCCAAATCAACGAAACATTGAACTCGAAGGAACCTTTGATCAGATCAAACAGGCTAGTGCAATGGTACGGGAACTCATCTTCAACATTGGCTCTGCCGCAGGTCACGCTAAAAATCCTACAGGTTCAGCCGCTTCAGCAAACAATTTCAAGACAAAGATGTGTGACAACTTTGCCAAGGGTTCATGCACCTTTGGAGACAGATGCCATTTCGCTCATGGAGCTAATGAGTTGCGGAAGCCAGTGGCTTAG 891 0.5039 MEVGGKRRGRPDGAAFGNGGFKKSKQETESFSTGIGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGYSAVTQMTNLGGNPAMPPIARNPMAPPTIPDGPPTVKTRICNKFNTPEGCKFGDKCHFAHGELELGRPIVPTHEDPRAMGPMGGRLAGRLEAPPPGLAAAASFGASATAKISVDASLAGAIIGKGGVNSKQICRLTGVKLSIKEHESDPNQRNIELEGTFDQIKQASAMVRELIFNIGSAAGHAKNPTGSAASANNFKTKMCDNFAKGSCTFGDRCHFAHGANELRKPVA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1520 296 MobiDBLite consensus disorder prediction 1 37 - -
Vvi13g1520 296 ProSiteProfiles Zinc finger C3H1-type profile. 36 64 IPR000571 GO:0046872
Vvi13g1520 296 ProSiteProfiles Type-1 KH domain profile. 172 236 - -
Vvi13g1520 296 ProSiteProfiles Zinc finger C3H1-type profile. 262 289 IPR000571 GO:0046872
Vvi13g1520 296 PANTHER CCCH ZINC FINGER/TIS11-RELATED 25 135 IPR045877 GO:0003729
Vvi13g1520 296 SMART kh_6 171 241 IPR004087 GO:0003676
Vvi13g1520 296 FunFam Zinc finger CCCH domain-containing protein 258 293 - -
Vvi13g1520 296 SUPERFAMILY CCCH zinc finger 261 293 IPR036855 GO:0046872
Vvi13g1520 296 CDD KH-I_AtC3H36_like 176 240 - -
Vvi13g1520 296 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Vvi13g1520 296 Pfam KH domain 174 238 IPR004088 GO:0003723
Vvi13g1520 296 Gene3D K Homology domain, type 1 169 242 IPR036612 GO:0003723
Vvi13g1520 296 SUPERFAMILY CCCH zinc finger 37 62 IPR036855 GO:0046872
Vvi13g1520 296 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Vvi13g1520 296 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 242 IPR036612 GO:0003723
Vvi13g1520 296 MobiDBLite consensus disorder prediction 23 37 - -
Vvi13g1520 296 FunFam Zinc finger CCCH domain-containing protein 97 133 - -
Vvi13g1520 296 SMART c3hfinal6 262 288 IPR000571 GO:0046872
Vvi13g1520 296 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Vvi13g1520 296 SMART c3hfinal6 101 128 IPR000571 GO:0046872
Vvi13g1520 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Vvi13g1520 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 287 IPR000571 GO:0046872
Vvi13g1520 296 Pfam RNA-binding, Nab2-type zinc finger 41 61 - -
Vvi13g1520 296 Gene3D - 256 293 - -
Vvi13g1520 296 Gene3D - 98 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1520 Vvi-Chr13 24053981 24059387 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi13g1520 KH_1 7.5e-13 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1520 - - vvi:100240955 583.178