Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1517 ATGGAGCTGGAGCTGAGCCTGGGCGATGCTTCTTCGAAGCCCTTTGCTTTCATGGAGAAGGCTCACCGTCAGGTTGCCAACAAGGGTTTAGGGTTTAGCATGGGTTTAGGGCTGGGTTCTGCTGGAAGAGACCAGGAAGAACAGAAAATCCATGAAGTGGCTGATGATGACGACGACGACGACGATGGAGAAGACGACGATGATGGAAGGGACCAAAGGCCCTCCATGGGTCTGCCTCTTCAGCTCGATCTTCTTCCTCTCGCTCCAGTTCCAAGGAATCAAGCTTCGCACCAGGGCCTGACATGGCCGTCTGACAACGGGAGCTCCGAGGCGGGCTCGTCCGGAAACGTGGGGCTACCGGCGAGGGGGCTTGACGTGAACAGGCTGCCGTCTACGGCGGTGACGGCGGCGGCGGGGGAGGAGGTGGAGGACGGGGCGGCGGCGGAGGTGGAATCGTCTCCGAATAGTGCAGCGTCGTCTTTTCAGATGGATTTCTGCATTTACAGAGGCGGAAATGGCGGAACCAAGAGGGACTTCGAAAGTGGTGAGGCGGAGAGAACTTCTTCCAGAGCCAGCGACGAAGACGATAACGGCCTCACCAGAAAAAAGCTCCGTCTCTCCAAAGAACAGTCCGCTTTCCTCGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCTAAACAGAAGCTGGCGCTTGCAAAGCAGTTGAACCTGCGGCCACGGCAAGTGGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACGAAGTTGAAGCAGACGGAAGTGGACTGCGAGTATCTGAAGAGGTGCTGCGAGACACTGACAGAAGAAAACAGAAGACTCCACAAGGAGCTTCAAGAGCTGAGGGCTCTCAAGACTTCCAACCCATTCTACATGCAGCTCCCCGCCACCACCCTCACCATGTGCCCCTCCTGTGAGCGGGTCGCCGCCACCTCCACCGCCCCCTCGGCCGCCGCGTCCACCGCCACCACCGCCACAGACCCCTCCACCACCACCACCACCACCGCCAACAGACCCAGATTCTACCCTTTCTCACATCAGCCTCCTGGAGCTTCATGA 1077 0.5757 MELELSLGDASSKPFAFMEKAHRQVANKGLGFSMGLGLGSAGRDQEEQKIHEVADDDDDDDDGEDDDDGRDQRPSMGLPLQLDLLPLAPVPRNQASHQGLTWPSDNGSSEAGSSGNVGLPARGLDVNRLPSTAVTAAAGEEVEDGAAAEVESSPNSAASSFQMDFCIYRGGNGGTKRDFESGEAERTSSRASDEDDNGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVAATSTAPSAAASTATTATDPSTTTTTTANRPRFYPFSHQPPGAS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1517 358 Pfam HD-ZIP protein N terminus 28 161 IPR006712 GO:0005634
Vvi13g1517 358 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 31 338 - -
Vvi13g1517 358 SUPERFAMILY Homeodomain-like 194 258 IPR009057 -
Vvi13g1517 358 SMART HOX_1 199 261 IPR001356 GO:0003677
Vvi13g1517 358 MobiDBLite consensus disorder prediction 94 115 - -
Vvi13g1517 358 MobiDBLite consensus disorder prediction 31 124 - -
Vvi13g1517 358 FunFam Homeobox-leucine zipper protein HAT22 205 251 - -
Vvi13g1517 358 MobiDBLite consensus disorder prediction 319 347 - -
Vvi13g1517 358 Gene3D - 205 255 - -
Vvi13g1517 358 ProSitePatterns 'Homeobox' domain signature. 232 255 IPR017970 GO:0000981|GO:0006355
Vvi13g1517 358 MobiDBLite consensus disorder prediction 176 199 - -
Vvi13g1517 358 MobiDBLite consensus disorder prediction 51 68 - -
Vvi13g1517 358 SMART halz 257 300 IPR003106 GO:0006355|GO:0043565
Vvi13g1517 358 CDD homeodomain 201 258 IPR001356 GO:0003677
Vvi13g1517 358 Coils Coil 270 293 - -
Vvi13g1517 358 Pfam Homeobox associated leucine zipper 257 291 IPR003106 GO:0006355|GO:0043565
Vvi13g1517 358 Pfam Homeodomain 201 255 IPR001356 GO:0003677
Vvi13g1517 358 ProSiteProfiles 'Homeobox' domain profile. 197 257 IPR001356 GO:0003677
Vvi13g1517 358 MobiDBLite consensus disorder prediction 319 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1517 Vvi-Chr13 24027414 24028796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1517 101 313 Homeobox Transcription Factor Family AT3G60390 57.965 9.41e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi13g1517 HD-ZIP_N 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1517 K09338 - vvi:100256230 605.134