Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1516 ATGGAGAATAATTCAAGGGGAGATATAATGGATCTTGATTTAAACCTAGAGCCTTTAGACCCTCCTCATGATTCCATGTTGGGATTAGGATCTTTATTGACTGAAATTGAAACTGCACATGGACGGATTGAAGAACGTATCCGACAACTTGAAGCCGTTAATTCCAGGGCTAGGCAGCGTCAGAGATGGCGCCAAGGTCGAATACCCCCTCAAACAACAACAATATCCACAGAACCCATGCAGGTTAACTCAATTGAGGGTAGAGTGCAAAATGGTGAGTGTAGTGTCGCTGGCCAAGAAAGAACTGTTGAGAATAGGGAGGGCTGTAAAAGGAATGGAGCCTATTTGGTAGCTAAGGCGTTGGGAATGGGTACAAATGCTAATGGTGGGGCGTTGGAAATGGGTACAAATGCTAATGGTGGGAGCTTTTTTGATTGTAATATATGCTTGGACATGGCCAGAGATCCTATACTGACTTGTTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGCCCAATGTTCATTCAAATGTGAAGGAATGCCCTGAATGTAATGGAGAGGTGATAGAAACACACATTACTCCAATTTATGGCCATGGGAGCAATAACCATAAAGTGGCTACAGGGGATTTAGGAGTGAAGGCCCCCCCTAGGCCTCATGCACATAGGATTGAAAGTATGAGGCAGCAACGTGTTGCCCGAGGCATACCTTCGTTTCCATCTGAGGAAACACTGCGGATTATTAGCAGCCAGATTTCACGGCAACAGGCACGCACTACAACTGAGAGAAGCAATGTCTTGCCCAGCCAAAATTCTACTTCACAGGTACCACCCGGCTCTGAGGCTGAGCCCAGCCAGGGCCTCCGTTCTGTTCAGTTTTCAAGATTATTATCACAAGGAACGGCTTCCTTTTCTTCCCTTTCATCTGCATTGAATACTGCACTGAATTCTGCGGAAAGATTGGTTGAGGACCTTGAGGAGTATATTCATAGCCACCTTACAAGAAGCCATGCTTCATCTGCTGTTAATGAGAGAGAGACTCTTACAACCATTGCAGCTGTTCTACAACTGGAAAGCCAAGCTCTCAGCACTGGTGTTAACACCACTGTGCCCCCTTCTTCTTCATCCTCCAGAACTGATGTGTCTGCCATTGCTATGCGCTCTGAAGACCAGGTAACAGATTCTACCGAAATCAATATATCAGTGCCCCATTCTTCATCTTCTAGGAGAAGAAATGATGCTCCAGGAGCCTCAGATATGGAGACTGGAGATACCCGTGAGCCTCGAAGGAGAAGGTTGAGATGA 1311 0.46 MENNSRGDIMDLDLNLEPLDPPHDSMLGLGSLLTEIETAHGRIEERIRQLEAVNSRARQRQRWRQGRIPPQTTTISTEPMQVNSIEGRVQNGECSVAGQERTVENREGCKRNGAYLVAKALGMGTNANGGALEMGTNANGGSFFDCNICLDMARDPILTCCGHLFCWPCFYQLPNVHSNVKECPECNGEVIETHITPIYGHGSNNHKVATGDLGVKAPPRPHAHRIESMRQQRVARGIPSFPSEETLRIISSQISRQQARTTTERSNVLPSQNSTSQVPPGSEAEPSQGLRSVQFSRLLSQGTASFSSLSSALNTALNSAERLVEDLEEYIHSHLTRSHASSAVNERETLTTIAAVLQLESQALSTGVNTTVPPSSSSSRTDVSAIAMRSEDQVTDSTEINISVPHSSSSRRRNDAPGASDMETGDTREPRRRRLR* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1516 436 MobiDBLite consensus disorder prediction 389 436 - -
Vvi13g1516 436 MobiDBLite consensus disorder prediction 389 415 - -
Vvi13g1516 436 MobiDBLite consensus disorder prediction 365 384 - -
Vvi13g1516 436 Pfam Zinc finger, C3HC4 type (RING finger) 146 186 IPR018957 GO:0046872
Vvi13g1516 436 SUPERFAMILY RING/U-box 140 196 - -
Vvi13g1516 436 SMART ring_2 146 186 IPR001841 -
Vvi13g1516 436 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Vvi13g1516 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 52 314 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi13g1516 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 217 IPR013083 -
Vvi13g1516 436 Coils Coil 33 60 - -
Vvi13g1516 436 MobiDBLite consensus disorder prediction 253 289 - -
Vvi13g1516 436 MobiDBLite consensus disorder prediction 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1516 Vvi-Chr13 24019558 24020868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1516 7 380 C3H Transcription Factor Family AT3G58030 32.028 1.44e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1516 K10666 - vvi:100246046 805.438