Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1503 ATGTCGGCCACCGCCGCCACCACCCCCACCACTCCCACCGCCGCCACCGCCATTGACCGCCGCACCTACTGGTGCCACGAGTGCGACATGAGCGTCACCCTCTCCCCGTCCTCCTCCTCCTCCCCCACCCTCCTCTGTCCCCACTGCCACAGCGACTTCCTCGAAGAAATGGACTCCCCCAACCCCAACCCCAACCCCAACCCCACCGCCCCCAACTTCTCCTTCCATTCCGAAAACTTCCTCCTCGACAGCCCCTACCTCCACCGCCTCATTCACCACCTCACCCATCCCTCCGACACCAACAACGACGGAAATGACAGCAGCGACCTCCCCCCTCCTCGCTACCTCAATCCCAATTCCGTCGCCGCCTCCAGGGCTTCCCTCGAAGCCCTCCCTACCTTCAAAATCACTCCCTCCTTCCTCCAACTCGATCCCATTTTGTTCTGTGCCGTCTGCAAGGATCAGTTCGTCGTCGACGTTGAAGCCAAGCGGCTTCCCTGCAACCATATCTACCATTCTGATTGTATTCTCCCCTGGCTCTCGCAGCAGAATTCGTGTCCGCTGTGTCGGTTTCGGCTCCCCACGGATGAGGGTGAGGATTCGGGGGATGCGGGGGCGACCGTCACGATGACCTTTGGGGATTTGATGGAGGACCATGAGCTGTTTGGGCTGGGGAGTACTTTGAGGCACATTGCCCGGAGGAATAGGCTGGTCTTTCCGGCCTTGTCTGCGGAGGGGCAGGCGCAGGCACAGGGTGAAAGTCTAGGGCCTGATAACAGTGTGGAGACTGTTTCCAGCTGGCCTCGTCAGGTTTTGGTTGGCGGCGGTGGCGGCGGTGGTGGTGATGCAGATTTTGGGGCCGGTGCTGTGGCGAATGAGGATGCTGATGCTATGATGCCTGAAGTTAGGGTATCGGGTTCTGTTTCGGCTTCATCTTGA 939 0.6006 MSATAATTPTTPTAATAIDRRTYWCHECDMSVTLSPSSSSSPTLLCPHCHSDFLEEMDSPNPNPNPNPTAPNFSFHSENFLLDSPYLHRLIHHLTHPSDTNNDGNDSSDLPPPRYLNPNSVAASRASLEALPTFKITPSFLQLDPILFCAVCKDQFVVDVEAKRLPCNHIYHSDCILPWLSQQNSCPLCRFRLPTDEGEDSGDAGATVTMTFGDLMEDHELFGLGSTLRHIARRNRLVFPALSAEGQAQAQGESLGPDNSVETVSSWPRQVLVGGGGGGGGDADFGAGAVANEDADAMMPEVRVSGSVSASS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1503 312 Pfam zinc-ribbon 22 57 IPR039525 GO:0061630
Vvi13g1503 312 MobiDBLite consensus disorder prediction 97 118 - -
Vvi13g1503 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 196 IPR013083 -
Vvi13g1503 312 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Vvi13g1503 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 194 - -
Vvi13g1503 312 Pfam Ring finger domain 149 190 IPR001841 -
Vvi13g1503 312 SUPERFAMILY RING/U-box 148 196 - -
Vvi13g1503 312 SMART ring_2 149 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1503 Vvi-Chr13 23884234 23885172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1503 19 215 C3H Transcription Factor Family AT3G60080 40.175 1.20e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1503 K11982 - vvi:100244303 572.392