Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1496 ATGCGTACATCTTGGGCCGATTCGGAAGAAGCTGAAGCCGCAGCAGTACCTTCCACCATCATCAACAATGGAGTAGTACCAAACAGTGGCGCCGCCGCCGCCGCCGCCGTTTCCGGCAACTCTCGTCCCGCCCGATCAGCATACGTTCCGCCACATCTTCGCAACCGCCCTCCTTCTTCAACTCCTCCCCCTCCGGCGGTCAGTGCTCCCCCTGCTGCCAACACTCGTTGGGGCGGTGGCGGCGGCGGCGGCGGCCGCTCCGGAGGCAGCTTCGGGGGAGCTGCTTCCAACACGAGAACTGGTGGTTGGGACCGCGGGAGGGAAAGGGAAGTTAATCCTTTTGGGGACGATGTTGATGTCGAACCCCCATTCGTTCAGCAGGAGAACTCCGGGATTAATTTTGACGCATACGAGGATATTCCGGTGGACACTAGTGGGGATAATGTTCCGCCGGCGGTCAATTCTTTTTCGGAGATTGATTTAGGCGATGCGCTTAATCTCAATATTAGGAGGTGCAAATATGTGAAGCCAACGCCAGTGCAGCGCCACGCCATTCCTATTTCGATTGCTGGCAGGGATTTGATGGCTTGTGCTCAGACTGGCTCTGGAAAGACTGCTGCTTTTTGCTTTCCCATTATCAGTGGTATTATGAAGGGCCAGTATGCGCAGAGGCCACGGGGCTCCCGGACTGCTTACCCTCTTGCTCTTATTTTATCCCCCACCAGAGAGCTGTCATGCCAGATACATGATGAAGCAAAAAAGTTTTCGTATCAAACTGGTGTAAGGGTGGTTGTTGCTTATGGAGGAGCTCCAATTAATCAGCAGCTAAGGGATCTGGAAAGAGGTGTTGACATTCTTGTTGCAACACCAGGAAGATTGGTTGATTTGCTAGAAAGGGCTAGAATTTCTCTTCAGATGGTCCAGTACCTGGCTCTAGATGAGGCAGATCGAATGCTGGATATGGGTTTTGAACCTCAAATTAGAAGGATTGTAGAACAGATGGATATGCCTCCACGAGGCGTAAGACAAACTATGCTATTCAGCGCCACCTTTCCAAAAGAAATACAGAGATTGGCCTCTGATTTTCTCGCAAATTACATTTTCCTGGCTGTTGGAAGGGTTGGTTCTAGTACTGATTTGATTGTCCAAAGAGTTGAATTTGTACAAGAGTCTGACAAGAGAAGCCACCTTATGGATCTTCTTCATGCACAGAGAGAAAATGGAACTCATGGAAAGCAAGCCTTGACTTTAGTTTTTGTCGAGACAAAGAAAGGAGCTGATGCTTTGGAACATTGGCTATGCATAAATGGGTTTCCAGCTACTTCTATTCATGGTGATAGATCGCAGCAGGAAAGAGAACACGCTTTGAGATTATTCAAAAGTGGTGCAACTCCAATTCTGGTGGCAACTGATGTGGCAGCACGGGGTCTTGATATTCCTCATGTTGCTCATGTGGTAAATTTTGACCTTCCCAATGACATCGATGACTATGTCCATCGGATAGGACGAACTGGCCGAGCTGGTAAAACAGGATTGGCCACTGCATTCTTCAATGAAAATAATTCGTCATTGGCTCGGGGCCTTGCTGAACTAATGCAAGAATCAAACCAAGAAGTGCCTGCTTGGCTTTCACGTTATGCAGCTCGGTCTTCTTATGGCGGAGGGGGAAGAAACCGTCGATCAGGTGGGGGTCGTTTCGGTGGCCGGGATTTCCGAAGGGATACTTCTTTTAATAGATCTGGAGGCGGTGGCGATTACTATGGTGGAGGTAGAAGTAACAGCGGATATGGAGCTTCTGGCAGCAGTTATGGAGGTGGTGGATATGGTGCAGGTGTGACTAGTGCGTGGGACTAG 1854 0.4973 MRTSWADSEEAEAAAVPSTIINNGVVPNSGAAAAAAVSGNSRPARSAYVPPHLRNRPPSSTPPPPAVSAPPAANTRWGGGGGGGGRSGGSFGGAASNTRTGGWDRGREREVNPFGDDVDVEPPFVQQENSGINFDAYEDIPVDTSGDNVPPAVNSFSEIDLGDALNLNIRRCKYVKPTPVQRHAIPISIAGRDLMACAQTGSGKTAAFCFPIISGIMKGQYAQRPRGSRTAYPLALILSPTRELSCQIHDEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARISLQMVQYLALDEADRMLDMGFEPQIRRIVEQMDMPPRGVRQTMLFSATFPKEIQRLASDFLANYIFLAVGRVGSSTDLIVQRVEFVQESDKRSHLMDLLHAQRENGTHGKQALTLVFVETKKGADALEHWLCINGFPATSIHGDRSQQEREHALRLFKSGATPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNENNSSLARGLAELMQESNQEVPAWLSRYAARSSYGGGGRNRRSGGGRFGGRDFRRDTSFNRSGGGGDYYGGGRSNSGYGASGSSYGGGGYGAGVTSAWD* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1496 617 MobiDBLite consensus disorder prediction 36 123 - -
Vvi13g1496 617 SMART helicmild6 427 508 IPR001650 -
Vvi13g1496 617 MobiDBLite consensus disorder prediction 55 70 - -
Vvi13g1496 617 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 547 IPR001650 -
Vvi13g1496 617 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Vvi13g1496 617 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 369 IPR014001 -
Vvi13g1496 617 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 129 547 - -
Vvi13g1496 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 522 IPR027417 -
Vvi13g1496 617 MobiDBLite consensus disorder prediction 102 116 - -
Vvi13g1496 617 FunFam ATP-dependent RNA helicase RhlB 372 551 - -
Vvi13g1496 617 SMART ultradead3 173 384 IPR014001 -
Vvi13g1496 617 MobiDBLite consensus disorder prediction 550 591 - -
Vvi13g1496 617 Pfam DEAD/DEAH box helicase 178 358 IPR011545 GO:0003676|GO:0005524
Vvi13g1496 617 FunFam Probable ATP-dependent RNA helicase DDX4 117 371 - -
Vvi13g1496 617 Gene3D - 118 371 IPR027417 -
Vvi13g1496 617 Pfam Helicase conserved C-terminal domain 393 508 IPR001650 -
Vvi13g1496 617 Gene3D - 372 552 IPR027417 -
Vvi13g1496 617 CDD SF2_C_DEAD 381 517 - -
Vvi13g1496 617 CDD DEADc_DDX3_DDX4 155 375 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1496 Vvi-Chr13 23850073 23857955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1496 138 540 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 6.08e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1496 K11594 - vvi:100240950 1071.23