Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1495 ATGAGTATGGATCTGATCTCTTCCGACTCACATGGCAACCTTGATGCCCAGATTTCTCAGCTCATGCAGTGCAAGCCCTTGTCCGAGCAAGAGGTTAGGACATTATGCGAGAAGGCGAAGGAGATACTAATGGAGGAAAGTAATGTTCAGCCAGTAAAAAGCCCTGTGACCATATGTGGAGATATTCATGGGCAATTTCATGATCTTGCAGAACTTTTTCGAATTGGAGGGAAGTGTCCAGATACGAATTACTTGTTCATGGGAGATTATGTGGATCGTGGGTATTATTCAGTTGAAACTGTCACGCTCTTGGTGGCCCTGAAAGTCCGTTATCCACAACGTATCACAATCCTCAGAGGAAATCATGAAAGCCGACAGATTACTCAGGTTTATGGGTTTTATGATGAATGCTTACGCAAGTATGGAAATGCTAATGTTTGGAAGATTTTTACAGACCTTTTTGATTATTTCCCATTGACGGCCTTGGTTGAATCTGAAATATTTTGTTTGCATGGTGGATTGTCCCCATCCATTGAAACACTTGATAACATTCGGAATTTTGACCGTGTTCAAGAAGTTCCTCATGAAGGGCCCATGTGTGATCTCTTATGGTCTGATCCAGATGATCGGTGTGGTTGGGGTATCTCTCCCCGTGGTGCTGGATATACTTTTGGCCAGGACATATCTGAGCAATTCAATCATACTAACAACCTAAAGCTGATTGCTAGAGCTCATCAACTGGTTATGGAGGGATTTAACTGGGGACATGAACAAAAAGTTGTCACCATATTTAGTGCACCCAACTACTGTTATCGCTGTGGAAACATGGCATCAATTTTGGAAGTTGATGACTGCAAAGGTCACACATTCATTCAGTTTGAACCAGCTCCAAGGAGAGGAGAACCGGATGTAACCCGCAGAACGCCTGATTACTTTTTGTAG 942 0.4299 MSMDLISSDSHGNLDAQISQLMQCKPLSEQEVRTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGFNWGHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1495 313 SUPERFAMILY Metallo-dependent phosphatases 12 298 IPR029052 -
Vvi13g1495 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Vvi13g1495 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Vvi13g1495 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Vvi13g1495 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Vvi13g1495 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Vvi13g1495 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Vvi13g1495 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Vvi13g1495 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Vvi13g1495 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 12 313 IPR047129 GO:0004722
Vvi13g1495 313 Gene3D - 6 313 IPR029052 -
Vvi13g1495 313 FunFam Serine/threonine-protein phosphatase 6 313 - -
Vvi13g1495 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
Vvi13g1495 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Vvi13g1495 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1495 Vvi-Chr13 23815691 23845473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1495 34 243 Calmodulin-binding Proteins AT5G63870 34.524 5.32e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1495 K04382 - vvi:100264866 659.833