Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1480 ATGGCGGACGCACTCCTCTCGGCTTCGCTTCAACTTCTATTCGACAGATTGGCTTCTCCGGCGTTCATAAACTTCCTTGGGCGACAGAATCACATCGATGAACTCCTCAGCGAGTTGAAGAGGAAATTGCTGGTTGTCCACAAAGTGCTCGATGATGCGGAGGTGAAGCAATTTTCAAACCCAAATGTCAAAAATTGGTTGGTCCATGTCAAGGATGTTGTGTATGATGCGGAAGACCTATTAGACGAGATCGCTACCGACGCTTTGCGGTGCAAGGTGGAAGCTGCTGACTCCCAAATCGGCGGGACTCATAAGGCGTGGAAATGGAACAAGTTCTCTGCTTGGGTTAAGGCTCCATTTGCTACTCAAAGCATGGAGTCCAGGGTGAATGGGATGATTGAGAAACTTGTGTCTATTGCTCAAGAAAAAGTTGGGCTCGGGCTGAAAGAAGGTGGGGGCGAGAAACTGTCACCAAGATCATCAATATCCACTTCGTTGGAGGATGAGTCCCTTGTTTTCGGCAGGGATGAAATTCAGAAGGAGATGGCTGACTGGTTGCTTTCTGATAATGCAACAGGCGACAACATGGAAGTGATGTCCATAGTCGGCATGGGCGGCAGCGGCAAGACCACTCTTGCTCGGCTTCTCTATAACGATGACCGAGTGAAAGAACACTTCCACTTGAAAGCATGGGTCTGTGTTTCCACTGAGTTTCTTCTTATCAAGGTCACCAAATCATTTCTGGAGGAAATCGGTTCTAAAACTGATTCTGACAATCTAAATAAGCTTCAGCTTGAACTCAAAGACCAACTTAGTAACAAGAAATTTCTGCTTGTTCTTGACGACGTCTGGGATTTGAAACCTCGTGATTGGGAAGGTTGGGATATGGAGCCTAGTGATGGTGAAGGTTGGGATAGGCTACGAACTCCACTCCTTGCTGCAGCACAGGGAAGCAAGATTGTTGTGACCAGTCGTAATGAATCTATTGCAACAACTATGCGTGCAGTCCAGACTCGTCATCTGGGACAATTAAGCCCTCAAAATTGTTGGAGGCTATTTGAAAAGCTTGCATTTGAGGACAGAGACTCCAACGCATTCCTTGAGCTTGAACCCATAGGCAGACAGATTGTGGACAAGTGCCAAGGATTGCCTTTAGCTGTAAAAGCACTCGGCCGTCTCTTGCACTCTAAGGTCGAAAAAAGGGAATGGGAGAATGTCTTGAACAGTGAAATATGGCATCTGCGGAGTGGTCCTGAAATTCTTCCATCTTTGAGATTGAGCTATCATCATCTTTCTCTACCTCTAAAGCATTGTTTTGCATATTGTTCAATTTTTCCCCGGAACCATGAATTCGACAAAGAGAAGCTGATTTTATTATGGATGGCAGAAGGTCTTCTGCATCCACAACTAAGCGACAGAAGGAGAATGGAAGAGATAGGTGAGTCGTATTTTGATGAGCTTCTTGCAAAGTCATTCTTTCAAAAATCTATTAGAAAAAAAGGATCATGCTTTGTAATGCATGATCTAATACATGAATTGGCTCAACACGTGTCTGGAGATTTTTGTGCTCGAGTGGAAGATGATGATAAGGTACCAAAAGTATCTGAGAAGACTCGTCACTTTTTGTACTTCAAAACTGATTATGACCAAATGGTTGCATTTAAAAAGTTTGAGGCTATTACTAAAGCTCAATCTCTTCACACATTCTTAGACGTGAAGCCATCACAATACGAGCCTTCTTATATTTTGAGTAAAAGAGTTTTGCAAGATATATTGCCAAAAATGAGGTGTCTACCGTGTTGTCGTTGCGAGAATATAAAATAA 1824 0.437 MADALLSASLQLLFDRLASPAFINFLGRQNHIDELLSELKRKLLVVHKVLDDAEVKQFSNPNVKNWLVHVKDVVYDAEDLLDEIATDALRCKVEAADSQIGGTHKAWKWNKFSAWVKAPFATQSMESRVNGMIEKLVSIAQEKVGLGLKEGGGEKLSPRSSISTSLEDESLVFGRDEIQKEMADWLLSDNATGDNMEVMSIVGMGGSGKTTLARLLYNDDRVKEHFHLKAWVCVSTEFLLIKVTKSFLEEIGSKTDSDNLNKLQLELKDQLSNKKFLLVLDDVWDLKPRDWEGWDMEPSDGEGWDRLRTPLLAAAQGSKIVVTSRNESIATTMRAVQTRHLGQLSPQNCWRLFEKLAFEDRDSNAFLELEPIGRQIVDKCQGLPLAVKALGRLLHSKVEKREWENVLNSEIWHLRSGPEILPSLRLSYHHLSLPLKHCFAYCSIFPRNHEFDKEKLILLWMAEGLLHPQLSDRRRMEEIGESYFDELLAKSFFQKSIRKKGSCFVMHDLIHELAQHVSGDFCARVEDDDKVPKVSEKTRHFLYFKTDYDQMVAFKKFEAITKAQSLHTFLDVKPSQYEPSYILSKRVLQDILPKMRCLPCCRCENIK* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1480 607 Gene3D - 343 427 IPR042197 -
Vvi13g1480 607 FunFam Probable disease resistance protein At1g61300 156 338 - -
Vvi13g1480 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 442 IPR027417 -
Vvi13g1480 607 FunFam Probable disease resistance protein At1g63360 428 516 - -
Vvi13g1480 607 PRINTS Disease resistance protein signature 270 284 - -
Vvi13g1480 607 PRINTS Disease resistance protein signature 380 394 - -
Vvi13g1480 607 PRINTS Disease resistance protein signature 198 213 - -
Vvi13g1480 607 Gene3D - 10 118 - -
Vvi13g1480 607 Gene3D - 160 339 IPR027417 -
Vvi13g1480 607 Pfam Rx N-terminal domain 6 96 IPR041118 -
Vvi13g1480 607 Gene3D - 428 517 IPR036388 -
Vvi13g1480 607 PANTHER DISEASE RESISTANCE PROTEIN RP 37 544 IPR044974 GO:0006952
Vvi13g1480 607 Pfam NB-ARC domain 193 408 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1480 Vvi-Chr13 23665695 23667518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1480 195 404 WRKY Transcription Factor Family AT5G45050 27.027 1.77e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1480 - - vvi:104881302 1202.58