Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1446 ATGGCTGCAATTTCCTCGCTCTTCTCACAAACCCTCCTCCACCATCCCACTAAAACCCTAACCCTTCACTCAAAACCTTCAATTCAACCGCTAAAACCCTTCCATTTCCTCAATTCAGTCACGTTCAAAGCCATAAAACCCAAACGACCCATCGCCGTCTCCGCCGTCACCGCAGAAGCGCCGGTCGCCACATCCGATGTTGCCGCGAGGAGACTATACGTGGGGAACATTCCCCGGACTCTCGACAGTGCGGAGCTTGCAAGGATCGTCGAAGAACACGGCGCCGTCGAGAAAGCAGAGGTGATGTATGATAAGTACTCTGGAAGGAGTCGCCGATTTGCTTTTGTTACAATGAAGACTGTTGAGGATGCAAATGCAGCAATTGAGAAGCTGAATGGCACTGAAATTGGAGGACGGGAGATCAAAGTAAATATAACAGAAAAACCTTTGCTGACTCTGGATATGTCACTTCTCCAGGCAGAGGAATCCCAGTTCATTGACAGTCCCCACAAAGTTTATGTGGGTAACCTTGCCAGGACAGTAACCACAGATACGCTCACCCAATTTTTCTCCGAGAAGGGAGGAAAGGTGCTTAGCGCAAAGGTTTCTCGGGTTCCAGGAACCTCAAAATCCAGTGGGTTTGGTTTTGTTTCGTTCTCGTCTGAAGAAGATGTTGAAGCTGCTATATCATCTTGCAACAATGCTTTCTTGGATGGGCAACGAATTCGTGTAAACAAAGCATAA 744 0.4798 MAAISSLFSQTLLHHPTKTLTLHSKPSIQPLKPFHFLNSVTFKAIKPKRPIAVSAVTAEAPVATSDVAARRLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKLNGTEIGGREIKVNITEKPLLTLDMSLLQAEESQFIDSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAISSCNNAFLDGQRIRVNKA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1446 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 247 IPR000504 GO:0003723
Vvi13g1446 247 Gene3D - 43 149 IPR012677 -
Vvi13g1446 247 SMART rrm1_1 71 144 IPR000504 GO:0003723
Vvi13g1446 247 SMART rrm1_1 171 245 IPR000504 GO:0003723
Vvi13g1446 247 CDD RRM1_PSRP2_like 71 150 - -
Vvi13g1446 247 Gene3D - 157 247 IPR012677 -
Vvi13g1446 247 PANTHER OS02G0815200 PROTEIN 65 246 - -
Vvi13g1446 247 FunFam 30S ribosomal protein 2, chloroplastic 157 247 - -
Vvi13g1446 247 SUPERFAMILY RNA-binding domain, RBD 165 247 IPR035979 GO:0003676
Vvi13g1446 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 148 IPR000504 GO:0003723
Vvi13g1446 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 142 IPR000504 GO:0003723
Vvi13g1446 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 243 IPR000504 GO:0003723
Vvi13g1446 247 SUPERFAMILY RNA-binding domain, RBD 62 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1446 Vvi-Chr13 23284934 23287755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1446 68 247 Eukaryotic Initiation Factors Gene Family AT4G34110 32.222 2.00e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1446 K13126 - vvi:100266645 459.529