Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1442 ATGGCGCCGAAACAGAGGACCCCCAAGGTGAGCCGAAACCCGAATCTGATTCGCGGCATAGGTAAGCACTCCAGATCCAAGATGTACCACAAGCGTGGTCTCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTTCCCCGCCACGATGCCAAGCCCAAGGCTCCGGCGCCCGCCGAGAAGTCCCCGAAATTTTACCCCGCCGATGATGTGAAGAAGCCCCTGGTCAACAGACACAAGTCCAAGCTCACCAAGCTCAGGGCTAGTATTACTCCGGGTACTGTGCTGATCATCCTTGCTGGGAGGTTCAAGGGGAAGAGAGTTGTGTTTCTGAAGCAACTTCCATCTGGATTGCTCCTAGTTACTGGACCATTTAAGATTAATGGTGTTCCTCTAAGACGTGTGAATCAAGCCTATATCATTGCAACTTCCACCAAGGTTGACATCTCTGGAGTAAATGTGGAAAAGTTTGATGACAAGTATTTTGCCAAGGAAACCCAGAAGAAGAAAAAGAAAGGAGAAGGCGAGTTTTTTGAAGCAGACAAGGAGGAAAAAAGTGTGCTCCCACAGGAGAAAAAGGATGACCAGAAGGCCGTGGATACACCATTGATAAAGTCCATTGAAGGAGTTCCAGACTTGAAGACCTATTTGGGTGCAAGGTTTTCTCTCAAGGCAGGCATGAAACCTCATGAGCTTGTTTTCTAG 702 0.49 MAPKQRTPKVSRNPNLIRGIGKHSRSKMYHKRGLWAIKAKNGGVFPRHDAKPKAPAPAEKSPKFYPADDVKKPLVNRHKSKLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYIIATSTKVDISGVNVEKFDDKYFAKETQKKKKKGEGEFFEADKEEKSVLPQEKKDDQKAVDTPLIKSIEGVPDLKTYLGARFSLKAGMKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1442 233 CDD KOW_RPL6 81 233 IPR041997 -
Vvi13g1442 233 PANTHER 60S RIBOSOMAL PROTEIN L6 3 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vvi13g1442 233 MobiDBLite consensus disorder prediction 1 27 - -
Vvi13g1442 233 FunFam 60S ribosomal protein L6 87 171 - -
Vvi13g1442 233 MobiDBLite consensus disorder prediction 172 198 - -
Vvi13g1442 233 MobiDBLite consensus disorder prediction 45 69 - -
Vvi13g1442 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vvi13g1442 233 Gene3D - 87 171 IPR014722 -
Vvi13g1442 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Vvi13g1442 233 Pfam Ribosomal protein L6, N-terminal domain 3 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1442 Vvi-Chr13 23265735 23267945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1442 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 82.833 7.65e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1442 K02934 - vvi:100252724 447.588