Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1431 ATGTATGGTCTTGGTGGCTCTCAAGCATCCTTCAGTAAATTCTCAGAAGAAGTGTTGAGAAAAAGTGGAGAATTAATGGCCCCAGATGTCTATAATCATCAGCACCACCCCCACCAAAACTCAGGCCTAATGCGGTACCAGTCTGCACCAAGCTCACTTCTGGGGAGTTTTGTTGATGGCAGCTCTGTCCATCTTCAGTCTTCAAGCCATGAAACCGAAACCATGTTCGCGAGGCTCATGTCGGGTAGTTCGGATTCTCAAGGCCTGCAGGGTGTTGGAGCTATGAAGCATGAAGAAGAGGTGATGGTGGAGGGTGTTCCACAGCAGAATGGATACTCTAATGGCTCCCAGATGATCTACAACAGCCAGCCAATGCAAACTATATCCGTTCATAATTCAGCGAGTCCCCGGACTAATATGGAAAGCTCCTTTATGACTTCCATGGCCGCTGAGAATTCTATGAAGATTAGGAATGAAAATTGTTCCAGTCTTGTTAGGCAGAGCAGCTCCCCTCCTGGACTTTTCCCCAACTTAACTTCTGAAAATGGATTTACTCCAACCAGGGAGATGGGAAACCTTAGAGCAGGCAACAGTACTAATGTCGAAGCCAATCCGTCGGTTAGCAGACTGAACAATCAAATAAGCTTCTCATCTGGGTTATCTTCTTGCAATGGACTACTACCTAAAATCTCCGAAATCAGAAATGAAAACATAGGGCTGCATAGCCCCAAGGATGGCAATAATAGTAACAGCAGATGCTACATTTCTAACTTCACAACAGATTCCTGGAGTGATTCTCCCTTCAGTGGTCTGACAAGAATGGCTGCTGATAATGATTTGAAGATGTTTTCGGGTTTAAACAGTTTGGAAGCTCAGAATGTGGATTCGCGATATCGGTCCCTTGGCTTGACTCACCATCTGAGCTTGCCTAAAAACTTCCCTCAGATCACTACTATAGAGAAGTTTCTGCACTTCCAAGACTCGGTTCCTTGTAAGATTCGAGCGAAAAGAGGATGTGCCACCCATCCCAGAAGCATAGCAGAGAGAGTGAGAAGAACCCGAATCAGCGAAAGAATGAGGAAACTGCAGGAGCTTTTTCCCAACATGGACAAGCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGACACTTAATGATACTAAAGTCAAGTGCACATGTTCCAGCATATGA 1227 0.4491 MYGLGGSQASFSKFSEEVLRKSGELMAPDVYNHQHHPHQNSGLMRYQSAPSSLLGSFVDGSSVHLQSSSHETETMFARLMSGSSDSQGLQGVGAMKHEEEVMVEGVPQQNGYSNGSQMIYNSQPMQTISVHNSASPRTNMESSFMTSMAAENSMKIRNENCSSLVRQSSSPPGLFPNLTSENGFTPTREMGNLRAGNSTNVEANPSVSRLNNQISFSSGLSSCNGLLPKISEIRNENIGLHSPKDGNNSNSRCYISNFTTDSWSDSPFSGLTRMAADNDLKMFSGLNSLEAQNVDSRYRSLGLTHHLSLPKNFPQITTIEKFLHFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQKQVKTLNDTKVKCTCSSI* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1431 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 400 IPR036638 GO:0046983
Vvi13g1431 408 CDD bHLH_AtbHLH_like 344 396 IPR045239 -
Vvi13g1431 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Vvi13g1431 408 SMART finulus 345 395 IPR011598 GO:0046983
Vvi13g1431 408 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 400 - -
Vvi13g1431 408 FunFam Transcription factor bHLH130 family 340 407 - -
Vvi13g1431 408 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
Vvi13g1431 408 Gene3D - 340 405 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1431 Vvi-Chr13 23165375 23167376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1431 29 395 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.623 2.24e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi13g1431 HLH 5.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1431 - - vvi:100855101 816.994