Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1430 ATGGAGAAAGGAGCGGCTCCTAGCCTATTCGTTAATGATGGTTCATTTATGGAGAGATTCAAACAGCTTCAGCAAGAGAACGAGAAGGAGAAGGGGAAGGGTGCCAAATTGGAGGAGCCTAAACAGCGCATGGTTGTGCCAGCAACCTCAACTCCTAATTCAATCCCTAGTAAAACCAACAATGTATCTAAGACTAATGGCACCCGCAAAACTCCCCTGGCTGCACCAAATGGCAAGCTTGCCTTCAGCTTGAAACAAAAGTCAAAGCTTGTGCCACCTCCTGTTAAGTTAGGTGCAGATGAGGATGAAGAAGAAACCGATGCTGGAAATTTGTCCAGTGATGCACCAATGAAACGACAGAAGTTGGGTCAAAAAGATTCCTCTGAGCATCCATCACCACAAGTAGATGTTGCACCACCTTCCCCAAGTGATCCTGCAGTGAAGAAAGTTGCAGACAAACTTGCGAGTTTTGTGGCAAAAAATGGAAGACAATTTGAAGATGTTACTCGTCAAAGAAATCCTGGAGATACCCCTTTTAAATTTTTATTCGATGAGGGATGCGCAGATTACAAATACTATGAATATCGGCTTGCTGAAGAGGAAAAGACTCTTTCACAGACTAGGGATTCCCAGACATCACAGAGTGGTGGTGGTACAAGCACGTCAGCTCCTAAATCAACTAGTGGTTCTCAAAGGTCAGTTCAGCAGCGATCTAATTATCAAATCCCAACCTCAGCTTTATATGAAGCCACTGAGGACACTAGGGCTTCGGGTAGTTCTGTTCAAGCAGCATTGGCTGGAAGAGCTGGTTATGGTGAATCTAGTGCACCAACAGGTGCAGATCCTATAGCAATGATGGAGTTTTACATGAAGAAAGCGGCGCAGGAAGAGAGGAGGAGGCAGCCTAAGCAGTCAAAAGATGAAATGCCTCCGCCTGCTTCTCTTCAAACTCCTGGGAAGAAAGGTCATCACATGGGTGACTATATCCCTCAAGAAGAGCTTGAAAAGTTCTTGTCTACCTGCAATGATGCGGCTGCGCAGAAAGCTGCTAGAGAGGCTGCAGAAAGGGCAAAAATCCAGGCTGACAATGTTGGGCATAAACTCCTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTTTGGGGAGCTCTAGAAATGGTATTGCAGATCCAATCATGGCTGGAAATGTGAAGTTGGACAACTTGGGGGTTGGTGCTCAACAGCCTGGTGAGGTAACTGCTGATGATGACATATATGAACAGTACAAGAAGCGGATGATGCTTGGTTATCGTTACAGACCAAACCCTCTGAACAATCCCCGAAAGGCATACTACTGA 1335 0.4577 MEKGAAPSLFVNDGSFMERFKQLQQENEKEKGKGAKLEEPKQRMVVPATSTPNSIPSKTNNVSKTNGTRKTPLAAPNGKLAFSLKQKSKLVPPPVKLGADEDEEETDAGNLSSDAPMKRQKLGQKDSSEHPSPQVDVAPPSPSDPAVKKVADKLASFVAKNGRQFEDVTRQRNPGDTPFKFLFDEGCADYKYYEYRLAEEEKTLSQTRDSQTSQSGGGTSTSAPKSTSGSQRSVQQRSNYQIPTSALYEATEDTRASGSSVQAALAGRAGYGESSAPTGADPIAMMEFYMKKAAQEERRRQPKQSKDEMPPPASLQTPGKKGHHMGDYIPQEELEKFLSTCNDAAAQKAAREAAERAKIQADNVGHKLLSKMGWKEGEGLGSSRNGIADPIMAGNVKLDNLGVGAQQPGEVTADDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1430 444 SMART G-patch_5 359 406 IPR000467 GO:0003676
Vvi13g1430 444 SUPERFAMILY Surp module (SWAP domain) 128 202 IPR035967 GO:0003723|GO:0006396
Vvi13g1430 444 MobiDBLite consensus disorder prediction 207 261 - -
Vvi13g1430 444 SMART surpneu2 148 202 IPR000061 GO:0003723|GO:0006396
Vvi13g1430 444 MobiDBLite consensus disorder prediction 46 72 - -
Vvi13g1430 444 MobiDBLite consensus disorder prediction 23 180 - -
Vvi13g1430 444 MobiDBLite consensus disorder prediction 291 306 - -
Vvi13g1430 444 Gene3D Surp module 134 206 IPR035967 GO:0003723|GO:0006396
Vvi13g1430 444 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 444 IPR040169 -
Vvi13g1430 444 ProSiteProfiles SURP motif repeat profile. 150 193 IPR000061 GO:0003723|GO:0006396
Vvi13g1430 444 Pfam Surp module 149 199 IPR000061 GO:0003723|GO:0006396
Vvi13g1430 444 MobiDBLite consensus disorder prediction 23 40 - -
Vvi13g1430 444 Pfam G-patch domain 362 405 IPR000467 GO:0003676
Vvi13g1430 444 ProSiteProfiles G-patch domain profile. 361 408 IPR000467 GO:0003676
Vvi13g1430 444 MobiDBLite consensus disorder prediction 201 326 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1430 357 417 C2H2 Transcription Factor Family AT5G26610 45.161 1.00e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1430 K13096 - vvi:100855141 826.239