Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1426 ATGTGCAGCACATTCAAGAAGAAGGCTCCAAAGGCCATAAAGGAAATCAGGAAGTTTGCCCAGAAGGCTATGGGAACAACCGATGTCAGAGTCGATGTTAAGCTAAACAAGCACATCTGGAGCCGTGGGATCCGAAGTGTTCCAAGGAGAATCCGTGTCCGCATTGCAAGAAAAAGAAATGACGAAGAAGATGCCAAGGAGGAGCTTTTCTCGCTGGTCACCGTTGCAGAGGTCCCACCAGAGGGATTGAAGGGCTTGGAAACTAAGATCATCGATGATGAGGATTGA 288 0.4826 MCSTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDEEDAKEELFSLVTVAEVPPEGLKGLETKIIDDED* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1426 95 PANTHER 60S RIBOSOMAL PROTEIN L31 4 94 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi13g1426 95 Pfam Ribosomal protein L31e 4 67 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi13g1426 95 SMART Ribosomal_L31e_2 1 68 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi13g1426 95 CDD Ribosomal_L31e 3 67 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vvi13g1426 95 Gene3D - 1 95 IPR023621 -
Vvi13g1426 95 FunFam Os08g0505300 protein 24 95 - -
Vvi13g1426 95 SUPERFAMILY Ribosomal protein L31e 3 67 IPR023621 -
Vvi13g1426 95 ProSitePatterns Ribosomal protein L31e signature. 29 43 IPR020052 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1426 Vvi-Chr13 23117013 23117300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1426 4 95 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 82.609 1.63e-50 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1426 K02910 - vvi:100855296 161.77