Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1424 ATGGCTCAGAAAACGGAGAAGGAAGAGACTGAGTTCAAAGTTCCAGAAACCCTCGCCCTATGCGTTAACAACTGTGGATTTACAGGCAATCCGGCCACAAACAACATGTGTCAGAAGTGCTTCAGCGCCTCCGCTTCGGCGGCGGCCGCGGCAGCTGCCGGAGCCTTGAAGAGTAGCCACAAGGTGTCCGGCGGAGCCGCAGACGCGAGATCCAGCTCCGCGAGGTCCCCCGAGCGAATGGACTCGCTGGCGGAGACCAGCCTGGATCGGACGAAGGACGCTGCCTCAGCTGCGGCGGTGGAGGAGGTCGGGAAGGTGAAGCGGGAGGTGAATCGGTGCTCTGGATGCAGGAGGAAGGTCGGGCTCACCGGATTCCGGTGCCGGTGCGGGGACCTGTTCTGCGCTGAGCATCGGTACACGGATCGGCACGAGTGCAGCTACGATTACAAGACCGCCGGTCGCGAGGCTATCGCGCGGGAAAATCCGGTAGTGAAAGCTGCGAAGATCGTGAGAGTCTGA 519 0.6146 MAQKTEKEETEFKVPETLALCVNNCGFTGNPATNNMCQKCFSASASAAAAAAAGALKSSHKVSGGAADARSSSARSPERMDSLAETSLDRTKDAASAAAVEEVGKVKREVNRCSGCRRKVGLTGFRCRCGDLFCAEHRYTDRHECSYDYKTAGREAIARENPVVKAAKIVRV* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1424 172 MobiDBLite consensus disorder prediction 62 91 - -
Vvi13g1424 172 SMART A20_3 18 42 IPR002653 GO:0003677|GO:0008270
Vvi13g1424 172 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 87 - -
Vvi13g1424 172 SUPERFAMILY AN1-like Zinc finger 101 166 IPR035896 -
Vvi13g1424 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 20 45 - -
Vvi13g1424 172 Pfam A20-like zinc finger 20 41 IPR002653 GO:0003677|GO:0008270
Vvi13g1424 172 Pfam AN1-like Zinc finger 113 150 IPR000058 GO:0008270
Vvi13g1424 172 ProSiteProfiles Zinc finger A20-type profile. 15 49 IPR002653 GO:0003677|GO:0008270
Vvi13g1424 172 Gene3D - 85 168 IPR035896 -
Vvi13g1424 172 MobiDBLite consensus disorder prediction 65 80 - -
Vvi13g1424 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Vvi13g1424 172 FunFam Zinc finger AN1-type containing 6 87 168 - -
Vvi13g1424 172 Gene3D - 1 77 - -
Vvi13g1424 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 19 171 - -
Vvi13g1424 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1424 Vvi-Chr13 23101601 23102119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1424 8 172 C2H2 Transcription Factor Family AT3G52800 39.053 1.20e-34 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1424 - - vvi:100852428 320.087