Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1423 ATGGACCATAACGAGACAGGGTGCCAAGCTCCTCCTGAAGCCCCCATACTTTGCATCAACAACTGTGGATTCTTCGGGAGTGCAGCCACCATGAACATGTGTTCCAAGTGCCACAAGGATTTGGTATTGAAGCAGGAACAGGCTAAACTTGCTGCATCATCGTTTGAGAGCATCGTGGAGGGCAGCTCCAACTGCAATGCAAAAGAGTCCATGGTCGCCATTGCCAAAGCTGATATAATACAGACTGGTCCATCAGAGTCAATGCCCGTCCCAACACAGGCAGCTTGTGCTTCACCAAGCGAGACCAATGACAGAGTGAAAGAGGGTCCAAACAGGTGCAGTTCTTGCAGGAAGCGAGTCGGTTTAACAGGCTTCAATTGTCGCTGTGGAAACATCTTCTGTGCAGTGCATCGCTACTCTGACAAACATGCCTGCCCATTCGACTACAGGACCGCTGCTCGAGATGCCATAGCCAAATCCAACCCTGTTATCAAGCCTGAAAAGCTTGACAAAATCTAA 519 0.4971 MDHNETGCQAPPEAPILCINNCGFFGSAATMNMCSKCHKDLVLKQEQAKLAASSFESIVEGSSNCNAKESMVAIAKADIIQTGPSESMPVPTQAACASPSETNDRVKEGPNRCSSCRKRVGLTGFNCRCGNIFCAVHRYSDKHACPFDYRTAARDAIAKSNPVIKPEKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1423 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Vvi13g1423 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Vvi13g1423 172 Gene3D - 2 65 - -
Vvi13g1423 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Vvi13g1423 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Vvi13g1423 172 MobiDBLite consensus disorder prediction 85 100 - -
Vvi13g1423 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Vvi13g1423 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Vvi13g1423 172 SUPERFAMILY AN1-like Zinc finger 101 167 IPR035896 -
Vvi13g1423 172 FunFam Zinc finger AN1-type containing 6 87 168 - -
Vvi13g1423 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Vvi13g1423 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Vvi13g1423 172 Gene3D - 85 168 IPR035896 -
Vvi13g1423 172 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1423 Vvi-Chr13 23096340 23096858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1423 5 172 C2H2 Transcription Factor Family AT3G52800 45.238 4.58e-44 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1423 - - vvi:100852460 360.533