Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1418 ATGGCTCCGCCCATCGCTGTCAGGGTGCTCGACCGCTACCGTGTCGCTCCTCCGCCAGGCTCCGCTCCTCCCACCTCCCTCCCCCTCACCTTTTTCGACATCCCATGGCTCCTCTTCCCCCCCTCCCAACCTCTCTTCTTCTTCCAATTCCCCATTCCCACCTCCCACTTCACTTCCGTCACTCTCCCTAAGCTCAAACACTCCCTTTCACTTACATTGCTGGAGTACTTCCCCTTCTCCGGCCGGCTAAGCCATTATCCGGAGTCCGAAACCCCAGCAATTGTCTACGCGGAGGGGGACTCCGTGGGGATGACCGTGGCGGAGGCGGACGGAGATTTTGATAATTTCTGCGGGCACCATTCGAAGGACGCCTGCGAGTTCCATCAGCTCGTCCCTCGATTGTCAGAATCCGACGAGGTTCCGATGATGGCGGTGCAGATTACAGTGTTCAGCAACGCCGGCATCTCCATCGGCCTCGCTCTCCACCATGCTGTATCAGACGGGAGGACATTCACCAATTTTATGAAGACGTGGTCTTCGATTTACAGAAATGGTGAAAAGTCCCTCCCAAAGTCTTTCCCTTTGCCATTCTACGATAGAAGCGTTATCAAAGAACTAAAGGGGCTGAAAGAAATATTCTTACAACAATGGAGAAAGCACAAAAAATACCTAAGCAAAACCAGTAGGGAAGACAGAGAAGACGACTCCGTCCGAGCCACATTTGTGATGAGTCCAAGAGAGATGGAGAAGGTAAAGAAATGGATAATGGCTCACTGTAGAAGAAAAGGCAAACCTCCGCCGCCACTTCTATCCGCCTACGTCCTCACCTGCGCGTTCGTCTGGGTTTGCCTCTGCGAGGCTCGCGCAGGCCGCGTCTCGACCGCGCCGCCTGACACTTGCTTCTTCGGCTTCAATGCAGGCGGCATCACCCGCCTGGACTACCCCGTGCCGGTGGCCTATTTGGGCAATTGCGTGGCGTTTGGGCGGGCGGTGGCTGGGAGGAGCGACCTGATGGGAGAGGAGGGGATAGTGGTGGCGGCGGAGGCGATCGGGCGGAAGATCAAGGAGCTGGATGGGGAGGTTTTGGGGGGAGCGGAGAGGTGGATTTTGGAGTGGGAGGTGTTGATAGGAAGCGAGGTCCATGTGGTGGTTCTGGGGTCACCGAAATTGGATCTCTATGAGGTTGATTTTGGATGGGGGAGGCCCAGGAAAATAGAGGAGGTCTCCATTGATGAGATGAAATCAGGTATTTCCCTGACTGAAAGCAGAGACATCAAAGGTGGGATTGAGATTGGATTGGTTCTTCCAAATGATCAAATGGATGTTTTTGCTTCTCTTTTTCATGGAGGTCTCAAGGTTCTTCCTTAA 1368 0.5417 MAPPIAVRVLDRYRVAPPPGSAPPTSLPLTFFDIPWLLFPPSQPLFFFQFPIPTSHFTSVTLPKLKHSLSLTLLEYFPFSGRLSHYPESETPAIVYAEGDSVGMTVAEADGDFDNFCGHHSKDACEFHQLVPRLSESDEVPMMAVQITVFSNAGISIGLALHHAVSDGRTFTNFMKTWSSIYRNGEKSLPKSFPLPFYDRSVIKELKGLKEIFLQQWRKHKKYLSKTSREDREDDSVRATFVMSPREMEKVKKWIMAHCRRKGKPPPPLLSAYVLTCAFVWVCLCEARAGRVSTAPPDTCFFGFNAGGITRLDYPVPVAYLGNCVAFGRAVAGRSDLMGEEGIVVAAEAIGRKIKELDGEVLGGAERWILEWEVLIGSEVHVVVLGSPKLDLYEVDFGWGRPRKIEEVSIDEMKSGISLTESRDIKGGIEIGLVLPNDQMDVFASLFHGGLKVLP* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1418 455 PANTHER - 7 452 - -
Vvi13g1418 455 Pfam Transferase family 8 445 - -
Vvi13g1418 455 Gene3D - 233 454 IPR023213 -
Vvi13g1418 455 Gene3D - 6 229 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1418 Vvi-Chr13 23061401 23062768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1418 44 443 Monolignol Biosynthesis Gene Families AT5G48930 23.022 4.75e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1418 - - vvi:100852494 900.197