Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1411 ATGTCGAAGAGGGTTCAATGCAAGTTCTTTGCACATGGAGCATGTCTTAAAGGGGACCATTGTGAGTTTTCACATGATTGGAAGGCCTCACCAAATAATATTTGTACCTTTTATCAAAAAGGTGTCTGCTCATATGGTGGTCGATGCAGATATGAACATGTTAAAGTTTCTCATTCTCAGCCTTCTGCTCCATCTTCATCAACAAGTTCTCACCAGTTGCTGGTTCCAGATTCTGCTTCTCTCACTCATCCTTCTAGAACTGTAACAAATGGGTTGATTCCAGCCCCAGGTGTCCCTCCAGAGCCATCAGCTTCTAGTCGACCTTTATTTCCACCCACTCAACCAGCATGGAATCAAGAGTCTGGGGATCAGGATTTCTTAGAAAATAATATTGGAGAACCTAGGACTGATAGGCCAGCTGACCAGTCCATCTGTTCATTTGCTGCTGCTGGTAGCTGTCCACGTGGGGAGAAATGTCCTCATATTCATGGCGACTTGTGCCCCACATGTGGAAAACATTGCTTGCATCCTTTCAGACCCGAGGAAATAGAAGAACATTTAAGAACTTGTGAAAAAAAGCAAAAGCATCTTGAGGCATTAAAACATAGTCAAGAAATAGAATGCAGTGTGTGCTTAGATCGTGTTCTTTCAAAGCCCACAGCAGCTGAACGGAAGTTTGGATTGCTTTCAGAATGTGATCATCCATTCTGTATATCCTGTATCAGAAATTGGCGTAGTAGTTCACCAGCCTCTGGAATGGATATCAATACTGCATTGAGGGCCTGCCCAATTTGTCGCAAGCTTTCATATTTTGTCATTCCGAGTGTCATTTGGTATTCAACAAAAGAAGAAAAGCAGGAAATCGTTGACAGCTACAAAGCAAAACTCAGGTCTATTGACTGCAAGCACTTTGATTTTGGAAATGGGACATGCCCTTTTGGCACTAGTTGTTTTTACAAGCATGCATACCGTGATGGTCGCCTGGAGGAGGTAGTTCTGCGTCATCTCGGGGCCGAAGATGGACATGTTATGATCGCTAAAAATATCAGGCTTTCAGACTTCCTTGGTGGCTTGCATATAAGGATGTCTACTACTATGAACTATGAAGGAAATGTGTGCTACTTTACTTTAGATGCTGAAGATCTCAATTGCCAGTGTCACTCGCCAGTTATTTTTAAGAATTGCTTGGTGGAGTGGAACTCGAACAAGGATTGA 1215 0.4288 MSKRVQCKFFAHGACLKGDHCEFSHDWKASPNNICTFYQKGVCSYGGRCRYEHVKVSHSQPSAPSSSTSSHQLLVPDSASLTHPSRTVTNGLIPAPGVPPEPSASSRPLFPPTQPAWNQESGDQDFLENNIGEPRTDRPADQSICSFAAAGSCPRGEKCPHIHGDLCPTCGKHCLHPFRPEEIEEHLRTCEKKQKHLEALKHSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPASGMDINTALRACPICRKLSYFVIPSVIWYSTKEEKQEIVDSYKAKLRSIDCKHFDFGNGTCPFGTSCFYKHAYRDGRLEEVVLRHLGAEDGHVMIAKNIRLSDFLGGLHIRMSTTMNYEGNVCYFTLDAEDLNCQCHSPVIFKNCLVEWNSNKD* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1411 404 Gene3D - 129 171 - -
Vvi13g1411 404 PANTHER MAKORIN-RELATED 5 334 IPR045072 GO:0000209|GO:0061630
Vvi13g1411 404 ProSiteProfiles Zinc finger RING-type profile. 208 266 IPR001841 -
Vvi13g1411 404 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Vvi13g1411 404 Gene3D - 1 70 - -
Vvi13g1411 404 CDD RING-HC_MKRN 206 266 - -
Vvi13g1411 404 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Vvi13g1411 404 SMART ring_2 208 265 IPR001841 -
Vvi13g1411 404 SMART c3hfinal6 295 323 IPR000571 GO:0046872
Vvi13g1411 404 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Vvi13g1411 404 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Vvi13g1411 404 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Vvi13g1411 404 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Vvi13g1411 404 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Vvi13g1411 404 ProSiteProfiles Zinc finger C3H1-type profile. 295 324 IPR000571 GO:0046872
Vvi13g1411 404 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Vvi13g1411 404 SUPERFAMILY CCCH zinc finger 4 26 IPR036855 GO:0046872
Vvi13g1411 404 MobiDBLite consensus disorder prediction 95 109 - -
Vvi13g1411 404 Pfam Zinc finger, C3HC4 type (RING finger) 208 265 IPR018957 GO:0046872
Vvi13g1411 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 276 IPR013083 -
Vvi13g1411 404 Pfam Zinc-finger containing family 3 61 IPR041686 -
Vvi13g1411 404 SUPERFAMILY RING/U-box 196 272 - -
Vvi13g1411 404 MobiDBLite consensus disorder prediction 84 120 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi13g1411 zf-CCCH_3 4.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1411 K15687 - vvi:100243143 672.159