Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1408 ATGACAGACCCCCACTGCAATTTCTTCAAAGGGTGGTTCAACTTCATGCCACTCCAGCCCCACTTCCCTCCCTCCATCTCTCCCTATCCTGCTCATGCCTGCAACAACTTGTACTCACAATCTCAAACCCCACCTCCTTCACCCCCTCTGAAAGAAGCTCTTCCCCTCCTCAGCCTCAGCCCAATTAGTAGAAGACAAGATGAGCCTCAAGTACTTCCATGCAGTAGTGCAATGGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGACAAAATCAAGACCAGAGATAAGGCTCAGAGCCTCTTCTCAACAAGTGCTTCTGATGGTGATGATAAAAGAACGGTGACAGTAGCCCTACATATTGGACTCCCTAGCCCTAGTTCTGATCTGGTGGGCTCTAGCCTACCCTCCTCAACAGAGATGAGTATTGATCAGGATCAAGGAATCCTTGGAGCTTCAGGGTGCCCCTTCAACAGAGTCAACAATGGCCAGTACTGGATCCCTACTCCCTCTCAGATTCTCATTGGCCCTACACAGTTTTCATGTGCTGTTTGCTGCAAAACCTTTAATAGATACAACAACCTCCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGACCGGAATCCTTGAGGGGAACACAGCCAACAGCCATGCTAAAGCTCCCATGCTACTGCTGCTCACCAGGCTGCAAGCACAACATAGATCACCCAAGATCAAGGCCACTCAAAGACTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCATGGAATAAAGCACTTCCTCTGCAGAAAATGCAATAAGCCCTTTGCTGTGAAAGGAGACTGGAGAACCCATGAGAAGAACTGTGGCAAAGTCTGGTACTGCATCTGTGGTTCTGATTTCAAGCACAAGAGGTCTCTCAAAGACCACATCAAGGCCTTTGGCCGAGGCCATGCAGCCATTGGCACTGACTTTTTTGATCAGGAAGAGGATGATCCTGCATCTGAAATTGAACATGATGGAGAACCCTCACCCTCAGTGTGA 1032 0.4787 MTDPHCNFFKGWFNFMPLQPHFPPSISPYPAHACNNLYSQSQTPPPSPPLKEALPLLSLSPISRRQDEPQVLPCSSAMEEEEKEEEEEDKIKTRDKAQSLFSTSASDGDDKRTVTVALHIGLPSPSSDLVGSSLPSSTEMSIDQDQGILGASGCPFNRVNNGQYWIPTPSQILIGPTQFSCAVCCKTFNRYNNLQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCSPGCKHNIDHPRSRPLKDFRTLQTHYKRKHGIKHFLCRKCNKPFAVKGDWRTHEKNCGKVWYCICGSDFKHKRSLKDHIKAFGRGHAAIGTDFFDQEEDDPASEIEHDGEPSPSV* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1408 343 Coils Coil 76 96 - -
Vvi13g1408 343 MobiDBLite consensus disorder prediction 60 108 - -
Vvi13g1408 343 FunFam Zinc finger protein WIP2 232 314 - -
Vvi13g1408 343 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Vvi13g1408 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Vvi13g1408 343 PANTHER ZINC FINGER PROTEIN WIP2 27 335 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1408 Vvi-Chr13 22957538 22960581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1408 1 334 C2H2 Transcription Factor Family AT3G57670 54.856 1.07e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi13g1408 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1408 - - vvi:100244743 680.633