Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1406 ATGATTGAAGTCAACAAGTTCTGCGAGACAGAGAATCAAAACTCCACAAAACGTGTGTCAGCGACTCATCGCCAGACAGCCAATCACACACAAGCGTCTTTAAAAAGCGAGAAAATGCTCCTCAAACCCGTCGCCACCACACAGTTTATCTTCGCTGTCTTCACTTCTTCTTCCCTTACCGGCGCCTGCGTTGAGATTTCATCGACTCCAATCTCTCCGAAGTTTCCAGAGAGATATTCCGATCGGTCTGAGACATGGCGACCACGGGAAGACAAAATGATTGATCAGCCTCAGTACCCAACTATCATGCAGAAGGTGGCTGGCCATCTGCATCATTCCCAAAACATTCAGGCTTTTCATGGCAGATTCCAACAGCCTACCTTGCAACAGAGACACTCTGCATATGGGAATTACACCAATGCCGCATTGCAGTACCCCATGTGTGGAGCTACTTTTGATCCATTGATGGTTGGGTCAAATGTCTCCCCTGTTTTTGTCCCAGCCCCCAAAGAGAAAGGCCTTGCCGGTTTTGCCATTGATTTCCTTATGGGTGGAGTCTCTGCTGCTGTATCCAAAACAGCTGCTGCTCCAATTGAGCGTGTGAAGCTTTTGATCCAGAACCAGGATGAGATGATCAAGACTGGTAGGCTCTCTGAACCTTACAAGGGCATTGGTGAGTGTTTTAGCCGGACAATAAAGGATGAAGGGTTTATGTCACTGTGGAGAGGAAACACTGCTAATGTCATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTCAAGGATTACTTCAAGAGGCTTTTCAATTTCAAGAAAGACAGGGATGGTTACTGGAAATGGTTTGCTGGAAACTTGGCGTCAGGAGGTGCTGCTGGTGCTTCGTCCCTTCTATTTGTTTACTCGCTGGACTATGCCCGAACCCGTCTAGCAAATGATGCAAAGGCTGCAAAGAAGGGAGGAGAGAGACAATTCAATGGCTTGGTTGATGTCTACAGGAAGACCCTGAAGTCTGACGGTATTGCTGGGCTTTACCGTGGATTCAATATTTCATGTGTTGGGATCATTGTTTACCGTGGTCTCTACTTTGGAATGTATGATTCTCTGAAGCCAGTGGTCCTTACTGGAGGTTTGCAGGATAGTTTCTTTGCTAGCTTTGCCCTCGGTTGGCTGATCACAAATGGTGCTGGCCTTGCATCCTACCCGATTGACACGGTTCGTAGAAGAATGATGATGACCTCCGGTGAAGCTGTCAAATACAAGAGCTCCTTTGACGCCTTTGCTCAAATCCTGAAGAATGAGGGTGCCAAGTCTCTCTTCAAGGGTGCTGGTGCTAACATTCTCCGTGCAGTTGCTGGCGCTGGTGTGCTTGCTGGTTATGACAAGTTGCAGGTGATCGTGTTCGGAAAGAAGTATGGATCTGGTGGCGCTTAA 1434 0.4777 MIEVNKFCETENQNSTKRVSATHRQTANHTQASLKSEKMLLKPVATTQFIFAVFTSSSLTGACVEISSTPISPKFPERYSDRSETWRPREDKMIDQPQYPTIMQKVAGHLHHSQNIQAFHGRFQQPTLQQRHSAYGNYTNAALQYPMCGATFDPLMVGSNVSPVFVPAPKEKGLAGFAIDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKTGRLSEPYKGIGECFSRTIKDEGFMSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGGLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSFDAFAQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGA* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1406 477 PRINTS Adenine nucleotide translocator signature 177 189 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi13g1406 477 PRINTS Adenine nucleotide translocator signature 385 401 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi13g1406 477 PRINTS Adenine nucleotide translocator signature 254 266 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi13g1406 477 PRINTS Adenine nucleotide translocator signature 221 242 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi13g1406 477 PRINTS Adenine nucleotide translocator signature 280 293 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi13g1406 477 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 170 476 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vvi13g1406 477 ProSiteProfiles Solute carrier (Solcar) repeat profile. 280 372 IPR018108 -
Vvi13g1406 477 MobiDBLite consensus disorder prediction 1 31 - -
Vvi13g1406 477 ProSiteProfiles Solute carrier (Solcar) repeat profile. 380 466 IPR018108 -
Vvi13g1406 477 FunFam ADP,ATP carrier protein, mitochondrial 178 473 - -
Vvi13g1406 477 Pfam Mitochondrial carrier protein 177 272 IPR018108 -
Vvi13g1406 477 Pfam Mitochondrial carrier protein 381 465 IPR018108 -
Vvi13g1406 477 Pfam Mitochondrial carrier protein 279 373 IPR018108 -
Vvi13g1406 477 Gene3D Mitochondrial carrier domain 178 473 IPR023395 -
Vvi13g1406 477 PRINTS Mitochondrial carrier protein signature 389 411 IPR002067 GO:0055085
Vvi13g1406 477 PRINTS Mitochondrial carrier protein signature 180 193 IPR002067 GO:0055085
Vvi13g1406 477 PRINTS Mitochondrial carrier protein signature 243 263 IPR002067 GO:0055085
Vvi13g1406 477 PRINTS Mitochondrial carrier protein signature 295 313 IPR002067 GO:0055085
Vvi13g1406 477 PRINTS Mitochondrial carrier protein signature 345 363 IPR002067 GO:0055085
Vvi13g1406 477 PRINTS Mitochondrial carrier protein signature 193 207 IPR002067 GO:0055085
Vvi13g1406 477 ProSiteProfiles Solute carrier (Solcar) repeat profile. 175 268 IPR018108 -
Vvi13g1406 477 MobiDBLite consensus disorder prediction 7 31 - -
Vvi13g1406 477 SUPERFAMILY Mitochondrial carrier 176 462 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1406 Vvi-Chr13 22922387 22926265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1406 93 477 Antiporters AT5G13490 81.491 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1406 K05863 - vvi:100248265 753.821