Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1404 ATGAACGGGAATAGACAAATGGAGGTGCATTACATAAACACTGGCTTTCCTTACACAATTACTGAAAGCTTTATGGACTTCTTTGAAGGTCTTGGCCATGTTCCGGTAAATTATGCTCAGGCTGAAGCAATGCATAATCAGTCTATCCAGGAAAACTTTTACTGGACAATGAATATGAATTCCTACAAATTCGGATTTTCTGGTCCCGGGAGTACTTATTATGGCCCTTATGATGTAAATGAACATGTACCAGGAATAGAGGTCAGCAGGAGACCTTGGGAATACCCTTCATCCATGATTGTTGAAGAACCTACAACCATAGAGACACAGCCTACAGGAAATGAAGTCATGAATGTGCATGCTATTCCTGAAGAATGCAGTCCAAATCATTACAGTGCCACCAGTTCTCAGGCTATTTGGCAAGACAATGTTGATCCTGATAACATGACCTATGAGGAATTGCTTGATTTGGGTGAGGCAGTGGGAACTCAAAGTCGAGGTCTTTCCCAGGAGCATATTAACTTGCTTCCAACCTGTAGGTACAAGTCCGGCCGCTTATTCTCAAGAAAAAGATCTGCGGAGAGATGTGTGATTTGCCAGATGGGGTATAAAAGAGGGGACCGTCAAATAAAATTACCCTGCAAGCATGTCTATCACACAGACTGTGGCACGAAATGGCTTACCATCAACAAGGTATGCCCAGTTTGCAACATCGAGGTATTTGGCGAGGAATCAAGGCACTAA 744 0.4301 MNGNRQMEVHYINTGFPYTITESFMDFFEGLGHVPVNYAQAEAMHNQSIQENFYWTMNMNSYKFGFSGPGSTYYGPYDVNEHVPGIEVSRRPWEYPSSMIVEEPTTIETQPTGNEVMNVHAIPEECSPNHYSATSSQAIWQDNVDPDNMTYEELLDLGEAVGTQSRGLSQEHINLLPTCRYKSGRLFSRKRSAERCVICQMGYKRGDRQIKLPCKHVYHTDCGTKWLTINKVCPVCNIEVFGEESRH* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1404 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 243 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vvi13g1404 247 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
Vvi13g1404 247 SMART ring_2 196 236 IPR001841 -
Vvi13g1404 247 SUPERFAMILY RING/U-box 195 241 - -
Vvi13g1404 247 Pfam Ring finger domain 195 237 IPR001841 -
Vvi13g1404 247 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Vvi13g1404 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1404 Vvi-Chr13 22907566 22911879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1404 1 247 C3H Transcription Factor Family AT3G63530 54.183 4.22e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1404 K19045 - vvi:100253394 530.791