Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1398 ATGAGAAAACCGGATCTCATGGGAAAAGATCGAGTACTAATCAATAACAACATTGCTAACAATAACAACAAGAACAACAACAATAAGCTTAGGAAGGGCTTGTGGTCGCCTGAAGAAGATGAGAAGCTCATGAGCTACATGCTGAGAAATGGACAAGGGTGCTGGAGCGATATCGCTAGGAATGCCGGCCTGCAGAGGTGTGGCAAAAGCTGCCGCCTTCGTTGGATTAACTACTTGAGACCCGACCTCAAGCGCGGCGCATTCTCACCCCAAGAAGAAGAGCTCATCATCCACTTGCATTCCATCCTTGGCAACAGGTGGTCTCAGATCGCGGCGCGCCTACCAGGGAGGACCGACAATGAAATAAAGAACTTCTGGAACTCTACCATCAAGAAAAGGCTGAAAAACAGCTTGCAGACGCACTCGCCCAACGACTGCCATGATTCGTCTTTGGAGCCTAGAGTTGTAGTAGATAACATCAATGCCATGGGCATGGGCGTTGGAGGATCATCAGGAATGCTGTTGTCCATGCATGAACATGAAATGATGAACATGTACATGGACTCATCTTCCTCCTCATTTTCCTCCATGAACACCATGCTAACAAGCAACCACTTAGACAACCCTTTCCCTCTCCTGGACAACCGGCATGACCAAATGGTATTCAGCCTGCCAAACTGCATGGCAAAACCCGAAATGACCGATGAGTTCGACGGACGATATGGGGTGACGGGAGGTGGGAATATGGGGGTAGAGAGGGAGATTTCCATACCGGGATCACAGAGTAATAGCACCACTGAGGAGAACAATGGTGCAACTCAGAATGAGTACTACACCATTGACATGAAAAACAATAATAGCAAAGTAGAGGAGAGTGACAACATTTTTGGAGTGGGAAATCATTGGCAAGGTGAGAACATGGGAATTGGAGAGTGGGATTTGGAGGGTTTGCTGGAAAATGCTTCCTCCTTCCCTTTCCTTGATTTCCAACTTCAATAA 999 0.4735 MRKPDLMGKDRVLINNNIANNNNKNNNNKLRKGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNSLQTHSPNDCHDSSLEPRVVVDNINAMGMGVGGSSGMLLSMHEHEMMNMYMDSSSSSFSSMNTMLTSNHLDNPFPLLDNRHDQMVFSLPNCMAKPEMTDEFDGRYGVTGGGNMGVEREISIPGSQSNSTTEENNGATQNEYYTIDMKNNNSKVEESDNIFGVGNHWQGENMGIGEWDLEGLLENASSFPFLDFQLQ* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1398 332 FunFam Transcription factor MYB46 86 156 - -
Vvi13g1398 332 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Vvi13g1398 332 PANTHER MYB DOMAIN PROTEIN 55 25 280 - -
Vvi13g1398 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Vvi13g1398 332 MobiDBLite consensus disorder prediction 257 276 - -
Vvi13g1398 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 79 IPR017930 -
Vvi13g1398 332 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Vvi13g1398 332 Pfam Myb-like DNA-binding domain 32 79 IPR001005 -
Vvi13g1398 332 Pfam Myb-like DNA-binding domain 85 128 IPR001005 -
Vvi13g1398 332 CDD SANT 87 127 IPR001005 -
Vvi13g1398 332 ProSiteProfiles Myb-like domain profile. 27 79 IPR001005 -
Vvi13g1398 332 Gene3D - 86 152 - -
Vvi13g1398 332 SMART sant 84 132 IPR001005 -
Vvi13g1398 332 SMART sant 31 81 IPR001005 -
Vvi13g1398 332 FunFam MYB transcription factor 29 85 - -
Vvi13g1398 332 CDD SANT 35 79 IPR001005 -
Vvi13g1398 332 Gene3D - 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1398 Vvi-Chr13 22837089 22838737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1398 1 331 MYB Transcription Factor Family AT3G08500 48.433 7.98e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi13g1398 Myb_DNA-binding 9.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1398 K09422 - vvi:100246605 646.351