Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1394 ATGTGCAGTGGTCCGGAGCAATCAAAAACCAAGTCATCTTCATCTCCATCTTCTACAGAAAGCAAAACTAACACCATAGATATGAATCATCTAACTGTTGAAACTGAAGATTCTTTTTCCAGTTTACATGAGCTTGCTGCCAACAATGATGTTGATGGCTTTAAGCGATCTTTAGAGCGCGATGCTTCTGCAATCAACGAGGTTGGCCTCTGGTATGGCCGGCAGAAGGGGTCAAAACAAATGGTTCTCAAGCATAGAACTCCGATGATGGTGGCTGCTACCTATGGTAGTGTTGAGGTTCTGAAGCTGATACTATCACGATCTGATGCTGATGTGAATATCTCATGTGGACCAGACAAAAGCACTGCTCTTCATTGTGCTGCATCTGGTGGATCTGTTAATGCTGTGGATGTTGTTAAGCTGCTTTTGTCAGCGGGTGCCGATCCAAATTCTATGGATGCAAATGGCCATTTTCCAGTTGACGTAATTGTTGTCCCTCCAAAGCTTCCGAGCATGAGAGTTGCCCTCGAAGAACTCCTTGTGAACAGTGCTTCTGATGGCTCTGTTGGTGAGCGCAATTTGCGGATCTCCATCACTAGTTCGAATTCCAACTCCAACTCACCGCCTCTCTCTTCATCGCCTGAAAATGGGTCTCCCTTCGCTTCAGATTCTGTGTCATCACCAATGGCTTTATCAAAGTTTAGTGACCAACCTGTGACATTGGCTTCAGAGAAGAAAGAATACCCAATTGATCCATCTCTTCCGGATATCAAGAACAGCATTTATGCAACAGATGAGTTCCGAATGTTTTCTTTCAAGGTCCGCCCTTGTTCCCGTGCTTATTCCCATGATTGGACTGAGTGCCCCTTTGTTCACCCTGGGGAAAATGCTCGAAGGAGAGACCCTCGGAAGTTCCACTACAGCTGTGTGCCTTGCCCTGATTTCCGAAAGGGGGCTTGTAGACGAGGAGATTTATGTGAATATGCCCATGGAGTTTTTGAGTGCTGGCTCCACCCTGCACAGTACCGAACTCGGCTCTGCAAGGATGGCACGAACTGTGCAAGACGGGTCTGCTTTTTTGCACACACATCCGAGGAGCTTCGGCCCTTGTACTTATCGACTGGTTCTGCCGTCCCTTCTCCTCGTGCATCTGGACCTGCTAATGCAATGGATATGGCAGCTGCTTTGAGCCTTTTACCTGGCTCTCCATCATCAGTCTCTGTCATGTCTCCTTCTCCATTCGCACAGCCCATGTCTCCATCAGCGAATGGCATTTCACACTCATCTGGAGCTTGGCCTCAGCCTAATGTTCCTACCCTTAACCTTCCTGGAAGCAACTTTCAGTCCAGTCGCCTGAGGTCATCCCTTAATGCTAGAGATATTCCACCTGAGGATTTCAACATGTTGCTGGATTTTGATGCTCAGCAGCAGCTTCTCAATGACTTGAGCTGTTTCTCACAGCCAAGGACCAATGCTGCTTCCTTGAGCCGTTCTGCTCGTTCTAAAACACTGACTCCTTCAAACCTCGAAGAGCTATTTTCTGCTGAGATCTCGTCATCTCCCCGTTACTCTGACTCTTCTGCAGTTTTCTCCCCATCACACAAGTCAGCTATTCTCAATCAATTCCAACAGCAGCAACAGAGTATGCTGTCACCTATAAATACAAATGTATTCTCTCCTAAAAATGTTGAGCACCCATTGTTGCAGGCTTCTTTTGGTATCTCATCTCCTGGGAGAATGTCACCTAGAAGCATGGAGCCCATCTCCCCAATGGGCCCAAGGCTTTCTGCGATTGCTCAGCGTGAGAAGCAGCACCAGCAGCTGCGGAGCCTTAGCTCCCGTGACCTTGGATCCAACAACCCTGCCTCTGTTGTTGGGTCCCCTGTGAATTCTTGGTCGAAGTGGGGTTCCCCAACTGGGAAATTAGATTGGTCAGTTAATGGGGATGAAATGGGTCGCCTGAAAAGGTCATCGTCATTCGAGCTTGGAAACAATGGTGAGGAGCCGGACCTGTCATGGGTCCATTCTTTAGTCAAGGAATCTCCACCTGAGATGATGAAAGAGAAGTTTGCAGCCCCGGTGTCTGCTTCTGCATCGTCCGGTGAGGGTTTGAATTCTAACTCTCAAATTGAATCCAATTCTAATTCTCAAATTGATTCTGTTGATCATTCCGTTATTGGAGCTTGGCTCGAGCAGATGCAGCTTGATCAGCTTGTAGTCTAG 2223 0.4768 MCSGPEQSKTKSSSSPSSTESKTNTIDMNHLTVETEDSFSSLHELAANNDVDGFKRSLERDASAINEVGLWYGRQKGSKQMVLKHRTPMMVAATYGSVEVLKLILSRSDADVNISCGPDKSTALHCAASGGSVNAVDVVKLLLSAGADPNSMDANGHFPVDVIVVPPKLPSMRVALEELLVNSASDGSVGERNLRISITSSNSNSNSPPLSSSPENGSPFASDSVSSPMALSKFSDQPVTLASEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTSEELRPLYLSTGSAVPSPRASGPANAMDMAAALSLLPGSPSSVSVMSPSPFAQPMSPSANGISHSSGAWPQPNVPTLNLPGSNFQSSRLRSSLNARDIPPEDFNMLLDFDAQQQLLNDLSCFSQPRTNAASLSRSARSKTLTPSNLEELFSAEISSSPRYSDSSAVFSPSHKSAILNQFQQQQQSMLSPINTNVFSPKNVEHPLLQASFGISSPGRMSPRSMEPISPMGPRLSAIAQREKQHQQLRSLSSRDLGSNNPASVVGSPVNSWSKWGSPTGKLDWSVNGDEMGRLKRSSSFELGNNGEEPDLSWVHSLVKESPPEMMKEKFAAPVSASASSGEGLNSNSQIESNSNSQIDSVDHSVIGAWLEQMQLDQLVV* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1394 740 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Vvi13g1394 740 MobiDBLite consensus disorder prediction 600 631 - -
Vvi13g1394 740 MobiDBLite consensus disorder prediction 690 717 - -
Vvi13g1394 740 Gene3D - 307 369 - -
Vvi13g1394 740 SMART ANK_2a 119 151 IPR002110 GO:0005515
Vvi13g1394 740 SMART ANK_2a 37 67 IPR002110 GO:0005515
Vvi13g1394 740 SMART ANK_2a 84 114 IPR002110 GO:0005515
Vvi13g1394 740 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 311 331 IPR000571 GO:0046872
Vvi13g1394 740 MobiDBLite consensus disorder prediction 1 29 - -
Vvi13g1394 740 MobiDBLite consensus disorder prediction 698 717 - -
Vvi13g1394 740 MobiDBLite consensus disorder prediction 199 224 - -
Vvi13g1394 740 Gene3D - 8 239 IPR036770 -
Vvi13g1394 740 Pfam Ankyrin repeats (3 copies) 77 153 IPR002110 GO:0005515
Vvi13g1394 740 ProSiteProfiles Zinc finger C3H1-type profile. 311 333 IPR000571 GO:0046872
Vvi13g1394 740 PANTHER UNKEMPT FAMILY MEMBER 44 681 IPR045234 -
Vvi13g1394 740 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Vvi13g1394 740 SMART c3hfinal6 306 332 IPR000571 GO:0046872
Vvi13g1394 740 SMART c3hfinal6 341 364 IPR000571 GO:0046872
Vvi13g1394 740 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Vvi13g1394 740 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Vvi13g1394 740 MobiDBLite consensus disorder prediction 599 631 - -
Vvi13g1394 740 FunFam Zinc finger CCCH domain-containing protein 66 264 332 - -
Vvi13g1394 740 SUPERFAMILY Ankyrin repeat 35 163 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1394 Vvi-Chr13 22776320 22778542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1394 33 737 C2H2 Transcription Factor Family AT5G12850 56.768 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi13g1394 Ank_2 1.6e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1394 - - vvi:100246539 1405.58