Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1390 ATGACAAAGAAGACGTACTGTAAGAGCAAGGAGTGTAGGAAGCACACCTTGCACAAGGTGACACAATACAAGAAGGGCAAGGATAGCTTAGCCGCACAAGGGAAGCGGAGGTATGATCGCAAACAGTCAGGTTATGGAGGACAGACCAAACCCGTCTTCCACAAAAAGGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAGAGGTGCAAGCATTTTGAGATTGGAGGGGACAAGAAGGGGAAGGGAACTTCTCTCTTTTAG 303 0.4884 MTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1390 100 FunFam 60S ribosomal protein L44 1 100 - -
Vvi13g1390 100 Gene3D - 1 100 - -
Vvi13g1390 100 MobiDBLite consensus disorder prediction 23 43 - -
Vvi13g1390 100 ProSitePatterns Ribosomal protein L44e signature. 58 69 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vvi13g1390 100 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 100 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vvi13g1390 100 Pfam Ribosomal protein L44 14 89 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vvi13g1390 100 SUPERFAMILY Zn-binding ribosomal proteins 2 89 IPR011332 GO:0006412
Vvi13g1390 100 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1390 Vvi-Chr13 22739043 22741393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1390 2 100 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 93.939 1.60e-63 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1390 K02929 - egr:104454007 213.001