Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1388 ATGCCGACTAAACCCAAAATTGAGGATCGGCGGATAGAACCTGGTGGTAAGAGCAATCCGTCATCAACAGTCTACTCCCAACCTTGGTGGCATGGTGTTGGGAACAATGCCATCTCCCCAGCTGCCTTGGGTGGAAGCCCATCAAAATCAACTTCAGTTGAACACCTTAACAGTCATATCACGAGCAATGGTTTCCAATTACAAGCTAATGGCAGGCTGGATGATGGAACTACCTTTAATAAAGGAACACAACCTACGGTAGCCCTGCAATCTGATGGAAGGAATGGACAGGAACACCAGCACCTCAATCCTACTGCTTCCTCAACACTGCCAATTATGAGTGAACATCTTGAACCAAATTCCCAAATGGAACTTGTTGGTCACTCAATTGTGTTGACATCATATCCGTATCAAGATCCACATAATGTGGGGATTATGACTTCTTATGGGCCACAGGCTATGGTGCATCCACATTTGTTTGGAATGCATCAGCCCAGAATGCCTTTGCCATTAGAGATGGAAGAGGAGCCTGTTTATGTGAATGCAAAGCAGTATCATGGGATTCTTAGACGGAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTGTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATGGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAA 1041 0.4611 MPTKPKIEDRRIEPGGKSNPSSTVYSQPWWHGVGNNAISPAALGGSPSKSTSVEHLNSHITSNGFQLQANGRLDDGTTFNKGTQPTVALQSDGRNGQEHQHLNPTASSTLPIMSEHLEPNSQMELVGHSIVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVSGAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSSAYHSSNGSEGGDCFGQPRENMQLNTAPHRALPIK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1388 346 MobiDBLite consensus disorder prediction 1 15 - -
Vvi13g1388 346 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Vvi13g1388 346 MobiDBLite consensus disorder prediction 236 288 - -
Vvi13g1388 346 MobiDBLite consensus disorder prediction 75 105 - -
Vvi13g1388 346 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 36 309 IPR001289 GO:0003700|GO:0006355
Vvi13g1388 346 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Vvi13g1388 346 MobiDBLite consensus disorder prediction 1 26 - -
Vvi13g1388 346 MobiDBLite consensus disorder prediction 295 323 - -
Vvi13g1388 346 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Vvi13g1388 346 Gene3D - 174 235 - -
Vvi13g1388 346 MobiDBLite consensus disorder prediction 213 346 - -
Vvi13g1388 346 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Vvi13g1388 346 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Vvi13g1388 346 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1388 Vvi-Chr13 22698442 22704518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1388 24 280 CCAAT-HAP2 Transcription Factor Family AT5G12840 41.065 1.37e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vvi13g1388 CBFB_NFYA 2.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1388 K08064 - vvi:100248239 696.812