Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1375 ATGGAGGCAGTGGTGGTCGACGCTGGTTCCAAGCTTCTCAAAGCTGGATTCGCTGTTCCAGATCAGGCTCCTTCCATGATAATTCCTACCCAAATGAAACGCACACTTGAAGATGGACCCTTGACAGACAGTTCGTTATTTGAGGACATTACTGTTGATCCAGTTGTGCGAGGTTTTATTAGAGATTGGGATGCCATGGAAGATTTATTGAATCATGTTCTCTACACTGGCCTCGGATGGGAAATGGGCAATGAAGGACAGATTTTATTTACAGACCCACTTTCAACTCCCAAGGCTTTCAGGGAACAATTGGTGCAATTGATGTTTGAAACATTTAATATCTCCGGCTTTTATGCATCAGAGCAAGCAGTATTATCACTTTATGCTGTTGGACGAATCTCAGGCTGCACTGTTGATATTGGTCATGGGAAGATAGATATTGCACCAGTAATTGAAGGTGCAGTTCAGCACATTGCCTCGAGAAGATTTGAAATTGGAGGTGTTGATTTGACAAAGTTGCTTGCTCAGGAACTTGGTAAATCCAACCCAACAGTGAATCTCAACATAACTGACGTTGAGAGGTTAAAAGAGCAATATTCATGTTGTGCCGAAGATGAACTTGCTTATGAGAAGATCCAACGATCATGCCAGAGAGAGCAACATACCCTGCCTGATGGACAGGTGATAAATATTGGAAGGGAGCGATATACTGTTGGTGAGGCTTTATTTCAGCCATCTATATTGGGTCTAGAAGCACATGGAATTGTTGAGCAGCTTGTTCGTAGTATCTCAACCGTGTCATCTGAGAATCACAGGCAGCTGCTGGAAAATACTGTGCTTTGTGGCGGCACTGCTTCCATGGGTGGTTTTGAGGATAGGTTCCAGAAAGAAGCTAGCCTATGCTCCTCAGCTATTCGTCCTTCACTTGTAAAGCCCCCAGAATATATGCCGGAGAACTTGACAATGTATTCTGCATGGGTGGGAGGGGCCATACTGGCCAAAGTAGTGTTCCCTCAAAATCAGCATATAACCAAGGGAGACTATGATGAAACTGGACCTTCCATTGTTCACCGAAAATGCTTCTGA 1086 0.4411 MEAVVVDAGSKLLKAGFAVPDQAPSMIIPTQMKRTLEDGPLTDSSLFEDITVDPVVRGFIRDWDAMEDLLNHVLYTGLGWEMGNEGQILFTDPLSTPKAFREQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEIGGVDLTKLLAQELGKSNPTVNLNITDVERLKEQYSCCAEDELAYEKIQRSCQREQHTLPDGQVINIGRERYTVGEALFQPSILGLEAHGIVEQLVRSISTVSSENHRQLLENTVLCGGTASMGGFEDRFQKEASLCSSAIRPSLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKGDYDETGPSIVHRKCF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1375 361 Gene3D - 123 324 - -
Vvi13g1375 361 Gene3D - 4 355 - -
Vvi13g1375 361 SMART actin_3 1 361 IPR004000 -
Vvi13g1375 361 PANTHER ACTIN 3 354 IPR004000 -
Vvi13g1375 361 FunFam Actin-related protein 7 4 127 - -
Vvi13g1375 361 SUPERFAMILY Actin-like ATPase domain 131 361 IPR043129 -
Vvi13g1375 361 PRINTS Actin signature 23 32 IPR004000 -
Vvi13g1375 361 PRINTS Actin signature 100 113 IPR004000 -
Vvi13g1375 361 PRINTS Actin signature 217 233 IPR004000 -
Vvi13g1375 361 PRINTS Actin signature 125 144 IPR004000 -
Vvi13g1375 361 FunFam Actin-related protein 7 165 252 - -
Vvi13g1375 361 Pfam Actin 2 361 IPR004000 -
Vvi13g1375 361 CDD NBD_sugar-kinase_HSP70_actin 4 166 - -
Vvi13g1375 361 Gene3D Actin; Chain A, domain 4 165 252 - -
Vvi13g1375 361 SUPERFAMILY Actin-like ATPase domain 2 138 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1375 Vvi-Chr13 22480911 22496520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1375 1 361 Cytoskeleton Gene Families AT3G46520 37.696 2.05e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1375 K16615 - vvi:100255047 723.391