Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g1361 | ATGGAGGATGTGGAGGAGCTGCAAAGTCAAAAACCTGATCAGGACGATGAAAATGAAATAGTTACTGAAAATGCAGCATTTGTGCATGGGGAACCTCTTCAAGATGGTACGGGTCCTCCAAAAGTTGATTCTGAAGTGGAAGTTCTTCATGAGAAAGTCACAAAGCAAATCATGAAGGAAGGTCATGGTCAGAAACCATCCAAATACTCAACATGTTTCTTGCATTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATGGAATGAACAACGTCCAGTTGAAATAGTCATAGGAAAAGAGAAAAAAGAAATGACAGGATTGGCTATTGGTGTCTCCAACATGAAGTCTGGTGAACGTGCCCTTTTACATGTGGGTTGGGAATTGGGCTATGGGAAAGAAGGAAGTTTTTCTTTCCCGAATGTTCCGCCTATGGCAGATATTTTGTATGAAGTTGAGCTTATTGGCTTTGATGAAACTAAAGAGGGGAAAGCACGTGGTGACATGACGGTGGAGGAAAGAATTGGAGCAGCAGACCGAAGAAAGATGGATGGAAATGTTTACTTCAAGGAGGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTACCGTGACATGGCTTTGGCTGTGAAGAATCCATGCCACCTTAACATGGCAGCATGCCTGATAAAGCTGAAGCGCTACGAAGAAGCCATTGGTCAATGCAGCATTGTATTGGCAGAGGATGAAAACAATGTCAAGGCATTATTTAGACGAGGAAAAGCTAGAGCAGAACTTGGGCAAACAGATGCTGCCCGTGAGGACTTCAGTAAGGCCCGTAAATATGCACCTGAAGACAAAGCCATTTCAAGGGAGTTACGTTTGCTTGCAGAACATGACAAGGCTGTTTATCAGAAGCAAAAGGAGATCTACAAAGGAATCTTTGGACCACCACCTGAACCCAAACCCAAGAAAACTAATTGGCTAATCCTCTTCTGGCAATGGCTCGTGTCATTACTCTATTCCCTCTTCAAACGGGAAAGACACAAAGCTGATTAA | 1098 | 0.4344 | MEDVEELQSQKPDQDDENEIVTENAAFVHGEPLQDGTGPPKVDSEVEVLHEKVTKQIMKEGHGQKPSKYSTCFLHYRAWTESTQHKFEDTWNEQRPVEIVIGKEKKEMTGLAIGVSNMKSGERALLHVGWELGYGKEGSFSFPNVPPMADILYEVELIGFDETKEGKARGDMTVEERIGAADRRKMDGNVYFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRYEEAIGQCSIVLAEDENNVKALFRRGKARAELGQTDAAREDFSKARKYAPEDKAISRELRLLAEHDKAVYQKQKEIYKGIFGPPPEPKPKKTNWLILFWQWLVSLLYSLFKRERHKAD* | 366 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g1361 | 365 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 65 | 158 | IPR001179 | GO:0003755 | |
| Vvi13g1361 | 365 | Gene3D | Tetratricopeptide repeat domain | 163 | 294 | IPR011990 | GO:0005515 | |
| Vvi13g1361 | 365 | Gene3D | - | 37 | 162 | IPR046357 | GO:0003755 | |
| Vvi13g1361 | 365 | SUPERFAMILY | TPR-like | 173 | 328 | IPR011990 | GO:0005515 | |
| Vvi13g1361 | 365 | FunFam | Peptidylprolyl isomerase | 166 | 294 | - | - | |
| Vvi13g1361 | 365 | ProSiteProfiles | TPR repeat profile. | 266 | 299 | IPR019734 | GO:0005515 | |
| Vvi13g1361 | 365 | Pfam | Tetratricopeptide repeat | 268 | 298 | IPR019734 | GO:0005515 | |
| Vvi13g1361 | 365 | SUPERFAMILY | FKBP-like | 43 | 167 | - | - | |
| Vvi13g1361 | 365 | PANTHER | ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED | 97 | 338 | IPR039663 | - | |
| Vvi13g1361 | 365 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 69 | 161 | IPR001179 | GO:0003755 | |
| Vvi13g1361 | 365 | SMART | tpr_5 | 232 | 265 | IPR019734 | GO:0005515 | |
| Vvi13g1361 | 365 | SMART | tpr_5 | 181 | 214 | IPR019734 | GO:0005515 | |
| Vvi13g1361 | 365 | SMART | tpr_5 | 266 | 299 | IPR019734 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi13g1361 | Vvi-Chr13 | 22298710 | 22305768 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi13g1361 | 46 | 334 | Calmodulin-binding Proteins | AT5G48570 | 34.459 | 8.43e-34 | 129 |