Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1360 ATGAAGAGAATGAGGTCCAGTGACGATCTCGATTCGAATTCGAATTCGAACCGGTCGTCGTCGTCGCATCGGGCGTTCTACTTCAAGTCGGAGAATGTAAGGAAGGGGCTGCTGTCATCGTCGTCGTCGTCGCGGTACGACCGCGATCGATCCGCGGAGGAGGATCGAGAGAGCTCGAGATCGGTGCGGAAGCGGTTGGATCACGATTCCGAAGGCTTTGATCGGAGAAAGGGATTTGAACGGTCCAGGGATTTGGTTTCATCGCCCCGGAGTGGGTACGGAGGCGATAGAGATCGGATTCACCGGTCGGAGAGCTTTGGTGGGGCGAGGAGGGAGTTTCCGAAGGGGTTTCGATCGGAAAGGGATCGATCGCGGCGAGAAGGAAGCGTTTCTTCGTGGCGGAGATTTGGGAGTAAGGAATTTGAGGAAGGGAGAGGGAGTAGAGGTGAGTTGGAGGGTAGAGGGAATGTGAGGAGGGATGTGAAGTCTCCAAATTGTTCGAAAGAATCTGGGAGTGAGCAATCGAGGATTAGGTCGCCGAGGGGAGTGAGAGAGGGGAAGTCGCCCACGTGGTCGAAGGAGTCGGGGAGTGAACAGTCGAAGATAAAGTCCCCTACGGGGTTGAAGGGAGGGAAGTCCCCGACTTGGTCGAAGGACTCGGGAAGTGAGCGGTCCAAGAGCGTTGAAGTCAAGAAGGCGGAGGAGTTGCAGGCTGAGAGTGGTAGTAGCAGTGAAATGGAAGAAGGGGAGTTGGAGCCTGAACCCGAAGCACTGCCTTGTGGTGGGTTGGATTCGGATCATAAGGAGAATGAGAGTGAAGACCCCGTGGAGGATGCCAATGCAAACGTAGAGGTTGAAGGGAAAGCAGTGTCAGAAAATGTAGCAGAGGTGAAGAATGAAATTGCTTCTGAGGGGAAAACAGAAGCTGGATCTCCTTCGAGCCATGAGACAGAAAAAGATGCAGGGAAGGAAGTTGATGAGATGTCAGATTGTGAGAAGGTTTCCAATGATAGAATGAGTGGGAGTGGAGATGCAATTGAAGATGGGGTGGGTGAGAATAATGGTGGCAACAAGGAAGAAGAATGCTCCAGGGAGAATAGCAGTGGTAAGGAGGAGGAAGCAGGAAAGGAAGAATTCGTTGAGAAAATATTGCCATTGGAAGAGGATCAAAAGGAACGGAAGGCGCGCAAGGATATAGATCTTGAGGTTGCAGTGAGGGATATTGATTTGACAGAACCCAGTAAGGAAGCTGCAGGAGAAAATGGAGTTCCTGAAGTAAATTTGACCCTTCTGTCGGCTGGTTTCAAGGATAAGGGCAAGAGTGTGGCTGTTTCACCTTCTGATGTTGATGACTCCGCAGAGGAAAGGGTGTGGATGGAAAGAGAATTGAGAGATCCTTTAACCTGTCGGGATGCTGATATGGAAGGACCAAGTACTAGGGGCTTTGAGTTGTTCTCTAGTTCCCCTGTTAAGAAATCAGAGAGGTCTGACCAATCAGGTGCTAATAAGCATAAAGATGAGAAGCTTTCACTAGAGCCTCTTGATCTTTCTCTTAGCTTACCAGACGTTTTGCTACCTATTGCTTCCCATGATGCAATCCCAGCAGCTCCTGGTTCCCCCAGTTATACGAGGAGTGTTCAGTCATTATCTAACACATTTCTCACCAATTCTGATGGATTTACTGCATCAATGTCCTTTTCAGGTTCTCAGCATTTTGTTCACAATCCAAGTTGTTCGTTAACGCATAATTCACTTGACAACTATGAGCAATCGGTGGGCAGTCGCCCAATATTTCAGGGAATTGATCAAATTTCACATGGAGCATGGCAGGGGCAGACTTCAAATGAGCCCAAGCACAAAGAAGTTCCCTTGTACTCAAGAATGTTGATGAATGGGAATGGCTCTCTTCATCACTCTCAAGCAGCAGAAGGTGTTAGAAATGGTAACTCCAGGCAAGGACAACATCTTAAAGCTGAAGGAAGCTCTAAATTACCCATTGGACTTGATCGGCAGCTGAGTTTCCAGAAACAGTTGTCAGGGGTACAGCCATGGCACCACAATGATGTTAGATCCCCCTCACAGAGCATTGGCTCCCGTGAAACCGGAAAAGAATATAGTAAAGATAAGGAAGTGCTCAGAGAGAAAAATGGTGGTAGTTTGTATAGGAGTGGTAGCTTCAAGGATCAGGAGCAACTTCCAATAGGTGGAGCTGATTTCGTTGAGACAATCATCGCCAGGATAGTTTCTGAACCAATGCATGTAATGGCTAGGAGATTTCATGACATGACAGCCCAATCCATAGCTTGTCTGAAGGATAGCGTTCGTGAGATCATGTTGAATGCAGATAAAATTATGCAGCTATCTGCAATTCAGAAAGCACTAGGGAACAGGTCTGACATTACATTGGAGATGTTATCAAAGTCACACCGGGCTCACTTGGAAATCTTGGTAGCTTTGAAAACTGGTCTTGAAGATTTTCTTCAGCAAAATAGTAGTATTCCATCATCTGAGTTAGGTGAGATCTTTCTGAACTTAAGATGTAGAAATCTGAATTGTCGGAGCCCTTTACCTGTGGATGAATGTGAGTGCAAGATCTGTGTGCAAAAGAAAGGTTTTTGTAGCGCCTGTATGTGTCTTGTATGTTCAAAGTTTGACATGGCATCTAATACATGTAGTTGGGTTGGGTGTGATGTTTGTCTTCATTGGTGCCATGCTGATTGTGGCTTACGAGAATCATTCATTAGAAATGGCCGTGGTGAAGCTGGGGCTCAAGGTACTGCTGAGATGCAGTTTCATTGTCTTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTAAAGGAGGTTTTCCAAAATTTTGCTAGAGACTGGAGTGCTGAAACCCTTTCCAGGGAACTTGAATATGTCAAGCGGATTTTTCGCCCCAGTGAGGATGTGAGAGGGAGAAAATTGCATGATATTGCTGATCAGATGCTGGCAAGATTGGCTTTTAACTCGCAAATCCACCTTCCTGAGATCTATAATTATATTATGAGCTTCCTAACAGAAAGTGACTCGGCGAAGTTTGTCCACACTCCTCTCTCTGGAAAGGAGCTTCCAGCTTCTAATTTTCCTGGAAAAGAAATACCCAACAAGAACCAAGTACAAGCACACAATGGGACTGCTGGGACGAGCCAAGAGGCCACATGGAGAAATTCTGCTTACTCAGAAAAGTCTCCTCAGTTGGAAAGAGCATCCAGTCTGCTTCCAAGCTTTGATTATGAGCGGAATGATAAGCGGACCATGGAAACAGAGTTGCAGAGAAATGCTCAAAAGGATCCTGTTTTTGATGAATTAGAAAGCATTGTGAGGATCAAACAGGCAGAGGCTAAAATGTTCCAATCACGTGCCGATGATGCAAGGAGAGAAGCTGAAGGCCTGAGACGCATAGCAGTAGCTAAGAACGAAAAAATTGAAGAAGAGTACACAAGTCGAATTGCAAAATTGCGTTTGGTTGAGACAGAGGAAATGCGCAAACAAAAGCTTGAAGAACTCCATAGTCTAGAAAGGGCTCATCGGGAATACTACAATATGAAGATGAGAATGGAAGAGGATATAAAAGATCTATTATTGAAAATGGAAGCAACAAAACGGAACCTTGCCATATGA 3648 0.4616 MKRMRSSDDLDSNSNSNRSSSSHRAFYFKSENVRKGLLSSSSSSRYDRDRSAEEDRESSRSVRKRLDHDSEGFDRRKGFERSRDLVSSPRSGYGGDRDRIHRSESFGGARREFPKGFRSERDRSRREGSVSSWRRFGSKEFEEGRGSRGELEGRGNVRRDVKSPNCSKESGSEQSRIRSPRGVREGKSPTWSKESGSEQSKIKSPTGLKGGKSPTWSKDSGSERSKSVEVKKAEELQAESGSSSEMEEGELEPEPEALPCGGLDSDHKENESEDPVEDANANVEVEGKAVSENVAEVKNEIASEGKTEAGSPSSHETEKDAGKEVDEMSDCEKVSNDRMSGSGDAIEDGVGENNGGNKEEECSRENSSGKEEEAGKEEFVEKILPLEEDQKERKARKDIDLEVAVRDIDLTEPSKEAAGENGVPEVNLTLLSAGFKDKGKSVAVSPSDVDDSAEERVWMERELRDPLTCRDADMEGPSTRGFELFSSSPVKKSERSDQSGANKHKDEKLSLEPLDLSLSLPDVLLPIASHDAIPAAPGSPSYTRSVQSLSNTFLTNSDGFTASMSFSGSQHFVHNPSCSLTHNSLDNYEQSVGSRPIFQGIDQISHGAWQGQTSNEPKHKEVPLYSRMLMNGNGSLHHSQAAEGVRNGNSRQGQHLKAEGSSKLPIGLDRQLSFQKQLSGVQPWHHNDVRSPSQSIGSRETGKEYSKDKEVLREKNGGSLYRSGSFKDQEQLPIGGADFVETIIARIVSEPMHVMARRFHDMTAQSIACLKDSVREIMLNADKIMQLSAIQKALGNRSDITLEMLSKSHRAHLEILVALKTGLEDFLQQNSSIPSSELGEIFLNLRCRNLNCRSPLPVDECECKICVQKKGFCSACMCLVCSKFDMASNTCSWVGCDVCLHWCHADCGLRESFIRNGRGEAGAQGTAEMQFHCLACDHPSEMFGFVKEVFQNFARDWSAETLSRELEYVKRIFRPSEDVRGRKLHDIADQMLARLAFNSQIHLPEIYNYIMSFLTESDSAKFVHTPLSGKELPASNFPGKEIPNKNQVQAHNGTAGTSQEATWRNSAYSEKSPQLERASSLLPSFDYERNDKRTMETELQRNAQKDPVFDELESIVRIKQAEAKMFQSRADDARREAEGLRRIAVAKNEKIEEEYTSRIAKLRLVETEEMRKQKLEELHSLERAHREYYNMKMRMEEDIKDLLLKMEATKRNLAI* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 636 657 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 10 27 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 636 662 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 353 395 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 94 166 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 46 84 - -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1149 1171 IPR004082 -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 812 827 IPR004082 -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 838 859 IPR004082 -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 884 904 IPR004082 -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 957 976 IPR004082 -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 758 780 IPR004082 -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 797 812 IPR004082 -
Vvi13g1360 1215 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1110 1130 IPR004082 -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 481 495 - -
Vvi13g1360 1215 Coils Coil 1130 1154 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 679 707 - -
Vvi13g1360 1215 Coils Coil 1164 1184 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 222 238 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 1034 1089 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 1040 1079 - -
Vvi13g1360 1215 Pfam Coiled-coil region of Oberon 1077 1203 IPR032535 -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 190 221 - -
Vvi13g1360 1215 Pfam PHD - plant homeodomain finger protein 847 970 IPR032881 -
Vvi13g1360 1215 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1213 IPR004082 -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 311 334 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 261 275 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 468 508 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 1 395 - -
Vvi13g1360 1215 MobiDBLite consensus disorder prediction 679 700 - -
Vvi13g1360 1215 Coils Coil 1192 1212 - -
Vvi13g1360 1215 CDD PHD_OBE1_like 877 936 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1360 Vvi-Chr13 22281448 22286389 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1360 847 995 PHD Gene Family AT5G57380 26.174 9.29e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1360 - - vvi:100248244 2241.85