Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1358 ATGTCTGAAATAATAGGAAGAGATAAAGATAAAAAGAAGATTATAAAATTATTGTTGCAATCAAACAATGAAGAAAATCTTTCTGTTGTTGCCATTGTTGGTATTGGGGGTTTAGGTAAGACTGCCTTAGCCCAATTGGTATACAATGATGAGAAGGTGGTAAGACATTTTGATCTTAGGTTGTGGGTGTGTGTTTCTGATGATTTTGATGTGAAAATCCTAGTTAGAAACATCATAAAATCTGCAACAGATGAAAATGTAGATAATTTGGTGTTGGAACAATTGAAAAACAAACTTCATGAAAAATTAAATTCCAAGAGATACTTGTTAGTAATGGACGATGTTTGGAATTACGATTTTGAAAAATGGAATCAATTGAGGATTTTGTTGAAAGTTGGTGCTAGGGGGAGCAAAGTTGTAGTGACTACTCGAAACTCTAAAGTTGCATCAATTATGACAATTGATCCCCCATATGTTTTGAATGGTTTAAACCATGATCAATCTTGGGGTTTGTTTAAAAGTTTAGCATTTGGAGAAGAGCAACAAAGAGCACATCCAAACCTCCTAAAAATAGGAGAAGAAATTACAAAAATGTGCAATGGAGTCCCTCTCGTAATCAGAACTTTAGGAAGGATATTGCATTCTAAAACCGAAGAAAGTCAATGGTTGTCCATAAAAAACAATAAAAATCTAATGTCGCTTCGAGATGGGAACAACATATTATTGGTACTAAAGTTAAGTTATGATAATTTACCAAGTCATTTGAAACAGTGTTTTACTTATTGTGCATTGTTTCCAAAAGACTATAAAATTGAAAAAAAAAAAGTTGATACAATTATGGATGGCTCAAGGTTACATTCAACCTTCGGATGA 873 0.3265 MSEIIGRDKDKKKIIKLLLQSNNEENLSVVAIVGIGGLGKTALAQLVYNDEKVVRHFDLRLWVCVSDDFDVKILVRNIIKSATDENVDNLVLEQLKNKLHEKLNSKRYLLVMDDVWNYDFEKWNQLRILLKVGARGSKVVVTTRNSKVASIMTIDPPYVLNGLNHDQSWGLFKSLAFGEEQQRAHPNLLKIGEEITKMCNGVPLVIRTLGRILHSKTEESQWLSIKNNKNLMSLRDGNNILLVLKLSYDNLPSHLKQCFTYCALFPKDYKIEKKKVDTIMDGSRLHSTFG* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1358 290 PANTHER DISEASE RESISTANCE PROTEIN RP 13 275 IPR044974 GO:0006952
Vvi13g1358 290 PRINTS Disease resistance protein signature 102 116 - -
Vvi13g1358 290 PRINTS Disease resistance protein signature 199 213 - -
Vvi13g1358 290 PRINTS Disease resistance protein signature 29 44 - -
Vvi13g1358 290 Gene3D - 1 155 IPR027417 -
Vvi13g1358 290 Pfam NB-ARC domain 8 250 IPR002182 GO:0043531
Vvi13g1358 290 FunFam Probable disease resistance protein At1g61300 1 157 - -
Vvi13g1358 290 Gene3D - 162 247 IPR042197 -
Vvi13g1358 290 Gene3D - 248 286 IPR036388 -
Vvi13g1358 290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 262 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1358 Vvi-Chr13 22270442 22271314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1358 26 280 WRKY Transcription Factor Family AT5G45050 24.364 6.29e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1358 - - vri:117929373 451.44