Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1320 ATGGCGGAGCGTCGCTCTAAACGCCCCAAAATCACCAGAGGGGAAGATGATTATTTACCTGGGAATATAACTGAGATTGAGCTCCATAATTTTATGACATTCAATGATCTGAAATGCAAACCGGGTTCACGTTTAAATCTTGTAATTGGACCCAACGGATCAGGGAAAAGCTCTCTCGTGTGTGCCATTGCCCTAGGTCTTGGCGGTGATCCTCAGCTGCTTGGAAGGGCTTCTAGTATTGGTGCATATGTGAAGCGTGGGGAGGAGTCGGGATACATCAAGATTTCCTTGAGAGGGGACACTGAAGAGGAGCAGATTACCATTATGCGCAAAATAGATACACGTAACAAGTCTGAGTGGTTGTTCAATGGCAAAGTGGTGCCAAAAAAAGATGTAATTGAAATCGTTCGAAGGTTCAATATCCAAGTCAACAATTTGACTCAATTCTTGCCACAAGACAGGGTCTCTGAATTTGCTAAGTTAACTCCTGTGCAACTTCTAGAAGAAACAGAAAAGGCTGTTGGTGATCCTCAACTACCAGTCCAACATTGTGCTCTTGTTCTTAAAAGTAGAGAACTGAAGAAACTTGAAAAAGCTGTCGAGCAGAATGGGGAAATGTTGAATTGTTTGAAGACACTTAATTCTGAACGAGAAAAAGATGTTGAGCGTGTCCGTCAAAGACAAGAACTTCTAGCAAAGGTTGAATCCATGAAAAAGAAACTGCCATGGTTGAAGTACGATATGCAGAAGGTCCGATATATGGAAGCTAAAGAGCAGGAGAATGATGCAAAAAAGAAGTTGGATGAAGCTGCTAAGACTTTGAATGATATCAGAGAACCTATAGAGAAACAGAGGCAGGAGAAAGCAGCACTAGATGCTAAATGCAAAAAAGTTAGTGGGCTCATGAATGGCAATTCTAAGAGGCGCATGGAACTTCTAGAGAAGGAAAATCGTTTGGGAGTGCAAGCACGAGGAAAATACAATGAAATGGAAGAGTTGAGGAGGCAAGAAGAATCACGTCAACAAAGAATTTCAAAAGCTAAGGAAGATCTTGTTGCTGCTGAACTAGAACTTGCTAGCCTGCCTCCCTATGAACATCCTAAAGATGAAATTGAAAGATTAGGATCTCAAATTCTTGAGCTAGAATTCTCTGCAAGTCAAAAAAGGCTCGTAAAGTCAGAAAAGGAAAAACTCTTAGGTCAGAAGAAAGGAGCCCTGAGGCAGTGTGTAGATAGGTTGAAGGATATGGAAAATAAAAATAATAAACTGTTACAGGCATTGCAAAATTCCGGAGCTGAAAAGATATTTGAAGCTTATCACTGGTTGCAGGAACATCGCCATGAGTTGAATAAGGACGTGTATGGTCCTGTGTTGCTTGAGGTTAATGTGTCACATCGGATTCATGCAGACTATTTGGAAGGTCATATCCCTTATTATATTTGGAAGATGCGCAAACTTGGCATCTCCTCCCGGCTTGACCAAGTGTTTGATTCTCCTGATGCTGTCAAGGAGGTTTTGACTAGCCAATTTGCTCTGGAACATTCGTATATTGGATCCAGGGAAACTGATCAGAAGGCTGATGAGGTTTCGAAATTAGGAATTTTGGATTTTTGGACTCCAGAAAATCACTACAGATGGTCTGTTTCTAGATATGGTGGTCATGTTTCAGCAATTGTTGAACCGGTGGCTCGCTCACGTCTTCTTGTCTGTAGTACGGATACTGGGGAAATTGAAAGGCTGAGGTCCAAGAAAAAGGAGCTTGAAGAGATCATTGATGATTTAGAGGAAAATTTCAAATCACTTCAGATAGAACAAAGACTTTTAGAGGATGAAGCAGCTAAACTTCATAAGCAGCGGGAGGAGATTATCAATACTGTACAACTTGAGAAGAGAAAGCGTCGTGAAATGGAAAACCGAGTTAGTCAAAGAAAACGGAAATTAGAGTCTATGGAGAAGGAGGATGACTTGGATACAGTTATGGCAAAGCTCATTGACCAAGCTGCAAAATTTAACATTCAACGGTACCAATGTGTAATTGAAATTAAGAATTTACTCATTGAGTCAGTTTCCTACAAACGAACTTTCGCTGAAAAGCATATGACCTCCATTGAATTTGATGCAAAGATTAGAGAATTGGAAGTTGGTATCAAGCAGCAAGAAAGGTTTGCTATGCAAGCATCCTTGCACTTTGAGAATTGTAAGAAGGAAGTGGAGGATCATCGACAGCAACTGGCAGCTGCCAAGAGGCATGCAGAATCAATTGCCGTGATCACTCCAGTACTTGAGAAAGCATTCCTTGAGATGCCAGCTACAATAGAAGATTTGGAGGCTGCTATTCAAGATACTATCTCTCAAGCCAATTCTATTCTTTTTCTAAACCACAACATTTTGGAAGAATATGAAGAGTGTCAACAAAAGATAGAAGCCATTTCTACAAAACTGGAAGCAGATGAAAAGGAACTGAGGATGTATTTGGCAGAAATAGATGCCCTGAAGGAAAATTGGCTTACCACATTGAGAAACCTTGTTGCTCAAATAAATGAGACCTTTAGTCGAAACTTCCAAGATATGGCTGTTGCTGGAGAAGTTTCATTGGATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGTTCAGGCAAGCAGGAGAACTTCAAGTTCTTAGCGCCCACCATCAATCTGGAGGGGAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGCAAGCCAACCTAATACACCACAATGTTTCTTACTTACACCAAAGTTGCTACCGGATCTAGAATACAGTGAGGCTTGTAGCATTCTGAATATAATGAATGGGCCATGGATTGAGCAGCCTTCAAAAGTGTGGAGCAATGGAGATTGCTGGGGAACTGTCGTTGGTTTATTAGGAAAAAGCCAATGCTAA 3027 0.4087 MAERRSKRPKITRGEDDYLPGNITEIELHNFMTFNDLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQLLGRASSIGAYVKRGEESGYIKISLRGDTEEEQITIMRKIDTRNKSEWLFNGKVVPKKDVIEIVRRFNIQVNNLTQFLPQDRVSEFAKLTPVQLLEETEKAVGDPQLPVQHCALVLKSRELKKLEKAVEQNGEMLNCLKTLNSEREKDVERVRQRQELLAKVESMKKKLPWLKYDMQKVRYMEAKEQENDAKKKLDEAAKTLNDIREPIEKQRQEKAALDAKCKKVSGLMNGNSKRRMELLEKENRLGVQARGKYNEMEELRRQEESRQQRISKAKEDLVAAELELASLPPYEHPKDEIERLGSQILELEFSASQKRLVKSEKEKLLGQKKGALRQCVDRLKDMENKNNKLLQALQNSGAEKIFEAYHWLQEHRHELNKDVYGPVLLEVNVSHRIHADYLEGHIPYYIWKMRKLGISSRLDQVFDSPDAVKEVLTSQFALEHSYIGSRETDQKADEVSKLGILDFWTPENHYRWSVSRYGGHVSAIVEPVARSRLLVCSTDTGEIERLRSKKKELEEIIDDLEENFKSLQIEQRLLEDEAAKLHKQREEIINTVQLEKRKRREMENRVSQRKRKLESMEKEDDLDTVMAKLIDQAAKFNIQRYQCVIEIKNLLIESVSYKRTFAEKHMTSIEFDAKIRELEVGIKQQERFAMQASLHFENCKKEVEDHRQQLAAAKRHAESIAVITPVLEKAFLEMPATIEDLEAAIQDTISQANSILFLNHNILEEYEECQQKIEAISTKLEADEKELRMYLAEIDALKENWLTTLRNLVAQINETFSRNFQDMAVAGEVSLDEHDIDFDQFGILIKVKFRQAGELQVLSAHHQSGGERSVATILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWSNGDCWGTVVGLLGKSQC* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1320 1008 Pfam RecF/RecN/SMC N terminal domain 23 948 IPR003395 -
Vvi13g1320 1008 Gene3D - 804 971 IPR027417 -
Vvi13g1320 1008 Coils Coil 406 433 - -
Vvi13g1320 1008 Coils Coil 330 350 - -
Vvi13g1320 1008 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 483 1004 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vvi13g1320 1008 Coils Coil 253 277 - -
Vvi13g1320 1008 Gene3D - 22 209 IPR027417 -
Vvi13g1320 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 949 IPR027417 -
Vvi13g1320 1008 Coils Coil 793 834 - -
Vvi13g1320 1008 FunFam Structural maintenance of chromosomes 5 804 975 - -
Vvi13g1320 1008 Coils Coil 577 653 - -
Vvi13g1320 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 288 IPR027417 -
Vvi13g1320 1008 Coils Coil 730 750 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1320 1 999 Structural Maintenance of Chromosomes family AT5G15920 67.466 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1320 K22803 - vvi:100249983 1924.06