Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1299 ATGGTTGTGGTGGAGGCGTTTCTGTCTTCCTTGTTTGAGGTGGTGCTGGACAAGCTGGTGGCTACCCCTTTGTTAGATTATGCACGCCGGATCAAAGTAGACACAGCAGTGCTCCAGGAGTGGAGTAAGACTTTGTTGGATCTCCAAGCAGTGCTGCATGATGCTGAGCAGAGGCAGATTCGGGAGGAAGCGGTGAAGAGTTGGGTGGACGATCTCAAAGCTTTAGCTTACGACATCGAAGATGTCCTGGACGAGTTTGACATGGAGGCTAAGCGATGCAAAGGGCCCCAAACCAGCACCAGCAAGGTACGGAAGCTTATCCCCTCTTTTCATCCTAGCGGTGTGATATTCAATAAGAAGATTGGTCAAAAGATCAAGACAATCACCGAGCAATTAGATAAGATTGTAGAAAGAAAGTCTCGTCTCGATCTGACACAGAGTGTTGGAGGGGTATCATCAGTGACTCAACAAAGGTTGACTACTTCTTTGATAGATAAGGCTGAGTTTTATGGTAGGGATGGTGATAAGGAGAAGATCATGGAATTGTTGCTATCTGATGAAATAGCTACTGCTGATAAGGTTCAGGTGATTCCGATTGTTGGTATGGGTGGGGTTGGAAAAACAACCCTCGCTCAAATGATCTATAACGACAAGAGGGTTGGGGACAATTTCGATATCAGAGGTTGGGGGTGTGTATCTGATCAGTTTGATTTGGTAGTGATAACGAAATCAATTTTAGAGTCGGTCTCTAAGCATTCATCTGATACTTCTAATACACTGCAATCACTACAAGATAGTTTGCAGAAAAAGTTGAATGGAAAAAGGTTTTTCCTTGTTTTGGATGATATATGGAATGAGGACCCCAATAGCTGGGGTACCTTACAAGCTCCTTTTAGAAATGGAGCACAAGGCAGTGTGGTAATGGTAACAACTCGTCTTGAAGATGTTGCATCTATTATGCGCACTACCTCTTCCCATCATCTTAGTAAACTCTCTGATGAAGATTGTTGGTCACTATTTGCAGGCATTGCCTTCGAAAACGTAACTCCAGATGCCCGCCAAAACTTGGAACCTATTGGTAGGAAAATAATAAAGAAATGTGACGGTTTGCCTTTGGCTGCAAATACATTGGCAGGTCTGTTGCGCTGTAAACAAGATGAGAAGACTTGGAAGGATATGCTGAACAGCGAAATATGGGATTTACGAACAGAACAAAGTAGAATTCTTCCGGCTCTACACTTGAGTTACCATTACCTCCCTACAAAAGTGAAGCAGTGCTTTGCATATTGTTCCATCTTTCCAAAGGATTATGAATTTCAAAAGGAGGAGTTAATTTTGTTGTGGATGGCGCAAGGTTTAGTGGGTAGCTTGAAAGGAGGGGAGACGATGGAAGATGTTGGTGAAATATGTTTTCAGAACCTATTATCAAGGTCATTCTTTCAACAATCCGAATTTTGTTTCAGATTGGAAATGGGACAGCAAAAAAATGTTTCGAAGAATGCTCGACATTTTTCATATGATCAATGTCGTTGGCTTACCGAGTTACCGGCCGAGATTGGAAAGCTCATCAACTTGCGTCATTTGGATATTCCCAAAACAAAAATAGAAGGGATGCCGATGGGAATCAATGGATTAAAAGATCTTCGAATGTTGACAACTTTTGTTGTTGGCAAGCATGGTGGTGCAAGACTCGGGGAGTTACGAGATCTTGCACACCTGCAAGGAGCACTCTCCATTTTAAACTTGCAGAATGTGGAGAATGCTACAGAAGTTAATTTGATGAAAAAGGAAGACCTTGACGACTTAGTGTTTGCATGGGATCCAAATGCGATTGTTGGTGACTTGGAGATTCAAACCAAAGTTCTCGAAAAGCTTCAGCCTCATAACAAGGTGAAAAGGCTCATCATTGAATGCTTCTATGGCATAAAATTTCCAAAATGGTTAGAAGATCCTTCGTTCATGAATTTAGTTTTCTTACAACTTAGAGATTGTAAAAATTGCTTGTCTTTGCCGCCACTTGGGCAATTACAGTCTCTCAAGGATCTCTGTATTGTGAAGATGGATGATGTGCGAAAGGTTGGTGTAGAGTTGTATGGGAATAGCTATTGTAGTTCAACTTCAATTAAGCCATTTGGATCCCTAGAGATTCTGAGGTTTGAAGAGATGTTAGAGTGGGAGGAATGGGTTTGTCGTGGAGTTGAATTCCCTTGTTTGAAGGAGCTTTATATCAAGAAATGTCCAAATCTGAAAAAGGATTTACCCGAACACCTTCCTAAATTAACAGAACTTGAGATTAGTAAATGCGAGCAGCTGGTGTGTTGTCTTCCAATGGCTCCCTCCATTCGTCGATTGGAGTTGAAGGAATGTGATGATAATTGTGAGAGTCTCGCATCTTTTCCGGAGATGGCGCTGCCACCCATGCTTGAAAGCCTTGAAATCAGAGCCTGTCCCACTCTGGATTGTTGTGATTCTCTCACGTCCTTTCCATTAGCCTCCTTCACAAAGCTTGAGACGCTTGATTTCTTCAATTGTGGAAATCTGGAGTCCCTTTACATTCCAGATGGACTTCACCACGTGGATCTCACATCTCTCCAGTCATTGGAAATACGTAATTGCCCTAATCTGGTATCTTTCCCACGAGGAGGATTGCCCACTCCCAATTTAAGAAGGCTTTGGATATTGAATTGCGAAAAGCTTAAGTCACTGCCCCAAGGGATGCACACCCTCCTTACATCCCTTCAACATTTGCATATATCTAATTGTCCAGAAATTGATTCATTTCCCGAAGGGGGTTTGCCCACTAATCTATCTGAGCTTGACATCAGGAATTGCAACAAACTCGTGGCCAATCAGATGGAGTGGGGCTTGCAAACGCTTCCCTTTCTTAGAACGTTGACGATTGAAGGATATGAGAACGAAAGATTTCCCGAGGAGCGATTTCTGCCCTCCACTCTCACCTCCCTTGAAATTAGGGGTTTTCCAAATCTGAAATCCCTGGACAATAAGGGCCTTCAGCACCTCACCTCTCTTGAAACTCTGCGGATTCGGGAATGTGGAAACCTCAAGTCCTTCCCAAAACAGGGGCTGCCCTCCTCCCTTTCAAGTCTTTATATTGAAGAGTGTCCTCTGCTGAACAAACGGTGCCAAAGGGATAAAGGGAAAGAATGGCCCAAGATTTCTCACATCCCCTGCATAGCGTTCGACCAATCGGATATGGAAAATGGGGAGGCCCTTGCATCGAAGCTCTTGCTCTCCTCTGCATTTATTGGCCCAGAATTTTTGGATGTAGGAGCGTCTACTATCTTGTTGTTGATTGAGGAAGGTTGTCTACCAGAATTGTTGGCTTCCTTGATTTTCTACTTGCAACAAAGTGCCTATTTCCAATTAGATAGAATGAAGGGCTCTGACAAACGTACTAACCGCCGCAAAGTGCCCTGCTTTCGATAG 3447 0.4328 MVVVEAFLSSLFEVVLDKLVATPLLDYARRIKVDTAVLQEWSKTLLDLQAVLHDAEQRQIREEAVKSWVDDLKALAYDIEDVLDEFDMEAKRCKGPQTSTSKVRKLIPSFHPSGVIFNKKIGQKIKTITEQLDKIVERKSRLDLTQSVGGVSSVTQQRLTTSLIDKAEFYGRDGDKEKIMELLLSDEIATADKVQVIPIVGMGGVGKTTLAQMIYNDKRVGDNFDIRGWGCVSDQFDLVVITKSILESVSKHSSDTSNTLQSLQDSLQKKLNGKRFFLVLDDIWNEDPNSWGTLQAPFRNGAQGSVVMVTTRLEDVASIMRTTSSHHLSKLSDEDCWSLFAGIAFENVTPDARQNLEPIGRKIIKKCDGLPLAANTLAGLLRCKQDEKTWKDMLNSEIWDLRTEQSRILPALHLSYHYLPTKVKQCFAYCSIFPKDYEFQKEELILLWMAQGLVGSLKGGETMEDVGEICFQNLLSRSFFQQSEFCFRLEMGQQKNVSKNARHFSYDQCRWLTELPAEIGKLINLRHLDIPKTKIEGMPMGINGLKDLRMLTTFVVGKHGGARLGELRDLAHLQGALSILNLQNVENATEVNLMKKEDLDDLVFAWDPNAIVGDLEIQTKVLEKLQPHNKVKRLIIECFYGIKFPKWLEDPSFMNLVFLQLRDCKNCLSLPPLGQLQSLKDLCIVKMDDVRKVGVELYGNSYCSSTSIKPFGSLEILRFEEMLEWEEWVCRGVEFPCLKELYIKKCPNLKKDLPEHLPKLTELEISKCEQLVCCLPMAPSIRRLELKECDDNCESLASFPEMALPPMLESLEIRACPTLDCCDSLTSFPLASFTKLETLDFFNCGNLESLYIPDGLHHVDLTSLQSLEIRNCPNLVSFPRGGLPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDIRNCNKLVANQMEWGLQTLPFLRTLTIEGYENERFPEERFLPSTLTSLEIRGFPNLKSLDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIEECPLLNKRCQRDKGKEWPKISHIPCIAFDQSDMENGEALASKLLLSSAFIGPEFLDVGASTILLLIEEGCLPELLASLIFYLQQSAYFQLDRMKGSDKRTNRRKVPCFR* 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1299 1148 Gene3D - 12 131 - -
Vvi13g1299 1148 SUPERFAMILY L domain-like 502 818 - -
Vvi13g1299 1148 Pfam NB-ARC domain 176 395 IPR002182 GO:0043531
Vvi13g1299 1148 Gene3D - 330 414 IPR042197 -
Vvi13g1299 1148 PRINTS Disease resistance protein signature 367 381 - -
Vvi13g1299 1148 PRINTS Disease resistance protein signature 755 771 - -
Vvi13g1299 1148 PRINTS Disease resistance protein signature 270 284 - -
Vvi13g1299 1148 PRINTS Disease resistance protein signature 196 211 - -
Vvi13g1299 1148 FunFam Probable disease resistance protein At1g61300 152 325 - -
Vvi13g1299 1148 Gene3D Ribonuclease Inhibitor 493 773 IPR032675 -
Vvi13g1299 1148 Gene3D Ribonuclease Inhibitor 818 930 IPR032675 -
Vvi13g1299 1148 Gene3D Ribonuclease Inhibitor 931 1063 IPR032675 -
Vvi13g1299 1148 PANTHER DISEASE RESISTANCE PROTEIN RP 514 769 IPR044974 GO:0006952
Vvi13g1299 1148 CDD RX-CC_like 5 135 IPR038005 -
Vvi13g1299 1148 Gene3D - 151 326 IPR027417 -
Vvi13g1299 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 430 IPR027417 -
Vvi13g1299 1148 SUPERFAMILY L domain-like 822 1060 - -
Vvi13g1299 1148 Pfam Rx N-terminal domain 4 101 IPR041118 -
Vvi13g1299 1148 Coils Coil 38 58 - -
Vvi13g1299 1148 Gene3D - 415 492 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1299 Vvi-Chr13 21358560 21367187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1299 194 375 WRKY Transcription Factor Family AT5G45050 26.882 8.43e-11 64.7