Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1295 ATGGATGATGGAGAGGTAGAGCTTTCAGATCATGTTCTGTTATCAAACCCCAATTCATCTAGCAATTTCCAGGGTTCAACCCCGATCGACTCGTTTCTTGATGATTTTCTGAAGAATACAAGAACATGCACTCACACTCACACTTGCAATCCCCCTGGCCCGGACGCGGCACACACTCATACATGCTATCACACACACACCCAAGTCTTTGCATCCGAAGAAGATGAAGTGCCAAACAATAAAGAACATTTGATTTCGAAAGTTAGGAGGCCTTCTGGAAATAGGGAAGCTGTTAGAAAGTATAGAGAGAAGAAGAAGGCACACACAGCTTACTTGGAGGAGGAAGTCAAGAAATTGCGCCTATTGAATCAGCAGCTTGTTAAGAAATTGCAAGGGCAGGCAGTTCTTGAAGCCGAGGTTTTGAGGCTGAGGAGCCTTTTGCTGGACCTTAGAGGAAAGATTGATAATGAGTTGGGTGTTTTCCCCTTCCAGAAGCAGTGTAATACCACTTTGAGTTTCAAGGAAGGTGATTGTGGACTGCAGTCTGCTAGCGGGGCAATTGACCCGAGGTGTGAGATGGATTTGCCATGCTTCCATCCTCATGTGGGATCATCTTCGCAGGCTAGTATTAGTGGGAGTGGGAAAATGGTGGTTTCATGGGAGGGAAATTGTCAGCCTGCAGTTGTAGATTGTAGAGGTAACATAAATGATATGGTAAGTGCTGAAGGACACACAATGGACACTGTGGAAGCCTTGGTGTCGTCCGCATCTCAAGCTGAATGA 783 0.4585 MDDGEVELSDHVLLSNPNSSSNFQGSTPIDSFLDDFLKNTRTCTHTHTCNPPGPDAAHTHTCYHTHTQVFASEEDEVPNNKEHLISKVRRPSGNREAVRKYREKKKAHTAYLEEEVKKLRLLNQQLVKKLQGQAVLEAEVLRLRSLLLDLRGKIDNELGVFPFQKQCNTTLSFKEGDCGLQSASGAIDPRCEMDLPCFHPHVGSSSQASISGSGKMVVSWEGNCQPAVVDCRGNINDMVSAEGHTMDTVEALVSSASQAE* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1295 260 SUPERFAMILY Leucine zipper domain 87 143 IPR046347 GO:0003700|GO:0006355
Vvi13g1295 260 Gene3D - 86 154 - -
Vvi13g1295 260 Pfam Basic region leucine zipper 87 138 IPR004827 GO:0003700|GO:0006355
Vvi13g1295 260 SMART brlzneu 82 149 IPR004827 GO:0003700|GO:0006355
Vvi13g1295 260 PANTHER CCAAT/ENHANCER BINDING PROTEIN 2 162 IPR031106 GO:0003700|GO:0006351
Vvi13g1295 260 CDD bZIP 87 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1295 Vvi-Chr13 21283411 21284193 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1295 1 181 bZIP Transcription Factor Family AT2G16770 51.075 4.12e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi13g1295 bZIP_2 1.9e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1295 K25785 - vvi:100255414 506.908