Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g1293 | ATGGAGAAGTATTTGAGGGAGAATTTTGACGTTGAGCCGAAGCGAGCTTCGGAGGAAGCTCGGAGACGATGGAGATCGGCCGTGTCTGTCGTCAAGAATCCCCGGAGACGGTTCCGGATGGTTGCCGATCTCGCTAAGCGATCCGAAACGGAAAGAAAGCGCCAGAAAATTCAGGAAAAGATTCGAGTAGCTTTATACGTGCAAAAGGCAGCATTGCATTTCATTGAGGCGGGTCATCGTATTGAATACAACCTCTCCGAAGAGGTTAGGCAAGCTGGTTATGAAATTGAACCAGATGAACTAGCATCTATTGTTCGAGCTCATGATATCAAGGGGCTGGAATTCAATGGTGGAGCTGAAGGATTAGCAGGAAAAGTGTGTGTCTCACTGGATACCGGTGTCAAAACAAGCGAAGTGCATTCTAGACAAAGTATCTATGGCCTCAACCAATATGTTGAAAAGCCTTCTGGAACTTTCTGGATGTTTATCTGGGAAGCCCTGCAAGACCTTACTCTAATAATCCTCATGGTATGTGCCGCGGTTTCTATAGGTGTTGGGATCGCCACAGAGGGATGGCCAAAAGGTATGTACGATGGGTTAGGAATAGTACTCAGTATTTTCTTAGTAGTGATGGTTACTGCAACTAGTGACTACAAGCAGTCCTTGCAATTCAAGGACTTGGACAAGGAGAAGAAAAATATAATTGTTCAGGTGACCAGAGATGGATACAGACAAAAGATTTCTATATATGATTTGGTGGTTGGAGACATTGTTCATCTATCCATTGGAGATCAGGTTCCAGCTGATGGGGTCTTCATATCAGGTCACAGTTTATCAATTGATGAATCAAGCTTGTCAGGTGAGAGTGAGCCGGTGAATATCAACAAACAGAGGCCATTTCTCCTATCTGGAACCAAGGTACAAGATGGGTCTGGGAAAATGCTGGTCACATCAGTCGGTATGAGGACTGAATGGGGAAGATTGATGGTTACTCTGAGTGAAGGGGGAGAAGATGAGACACCACTGCAGGTGAAGCTTAATGGAGTGGCGACCATTATTGGGAAGATTGGTCTGGCTTTTGCTGTGCTGACATTTTTGGTGCTGATGGGACGGTTTCTGCTCCAGAAGGCACTTCACAGCAACATCACAGACTGGTCTTTCAGCGATGCAGTGACAATTTTGAATTATTTTGCTATTGCAGTTACTATAATTGTGGTTGCAGTCCCAGAAGGGCTTCCATTGGCAGTGACATTGAGCCTTGCTTTTGCAATGAAGAAATTGATGAATGCTAAGGCACTCGTGCGGCATTTATCTGCTTGTGAAACAATGGGATCTGCCAGTTGCATTTGCACGGATAAAACAGGTACGCTGACTACAAATCATATGGTGGTGAATAAAATATGGATCTGTGAAAAGTCTAAAGCGATAGAAACTAACGACAGTAAAGATGTATTTCAGTCTTTAATCCCTGAAAAAGTATATAGCATCCTTTTGCAGTCTATATTTCAGAACACTGGATCTGAGGTTGTCAAAGGGAAAGATGGAAAGGTTAGCGTTTTGGGTACTCCAACAGAAACAGCTATATTAGAGTTTGGCTTGCATTTAGGTGGTGAGAGTGCCCACTACAAGGAGTCTGAGATAGTGAAGGTTGAGCCTTTCAATTCAGTCAAGAAAAAGATGTCCGTGCTCGTAAGTCTTCCTGCTGGTGGGTTCCGAGCATTCTGCAAAGGCGCATCAGAAATTGTTTTAGAGATGTGCGACAAGATTATTAATACCAATGGAGAATTTGTGTCCCTGTCTGCAGACCAGAGAAAGAACATCACAGATGTCATAAATGGTTTTGCCTGCGAAGCCCTTAGAACTCTATGCTTGGCTTTCAAGGATATAGAAAACAGTTCTAAGGACGATGATATTCCTTATAGTAACTATACACTAATAGCAGTTCTTGGAATCAAGGATCCAGTTCGCCCTGGAGTGAAGGATGCTGTTCGGACTTGTTTAGCTGCTGGGATTACAGTGCGGATGGTCACAGGCGACAATATCAATACAGCAAAAGCCATAGCTAAAGAATGTGGCATATTGACTGATGATGGTCTGGCAATAGAAGGGCCAGATTTTCGTAATAAGAGCCCCCAGGAGATGAAGGAGTTGATACCAAAACTTCAGGTGATGGCTCGATCATTGCCTTTGGACAAGCACACCTTGGTAAGCCAGCTAAGAAATTCATTTAAAGAAGTTGTGGCAGTGACTGGCGATGGGACCAACGATGCTCCTGCTTTGCATGAGGCGGACATTGGACTTGCCATGGGCATAGCAGGAACTGAGGTGGCAAAAGAAAATGCGGATGTGATTATAATGGATGATAACTTCTCGACTATAGTGAATGTTGCCAGATGGGGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGGATCTGCTCCTCTTACTGCTGTCCAGTTGCTCTGGGTGAATATGATCATGGACACTCTTGGTGCATTAGCCTTGGCTACAGAGGCTCCAACTGATGGCCTGATGAAACGAGCTCCAGTTGGTAGGAATGCAAATTTCATCACCCGAACCATGTGGAGAAATATCATAGGCCAAAGCATCTATCAACTAGCCGTCCTTTTGGTCTTCACCTTCCAAGGGAAACGGCTTCTAAAGCTCACTGGTTCAGACGCCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAGGTATTCAATGAAATAAACAGCCGTGATATGGAGAAGATAAATGTTTTCCAAGACATGTTCAGCAACTGGATATTCATAATCATAGTCGTCTCCTCAGTTACTTTCCAGGCCATAATGGTAGAATTTTTGGGCACTTTCGCCGGAACAGTGCCACTGAGCTGGGAGTTGTGGCTATTAAGCATCTTAATCGGGGCTGTGAGCTTAATCATCGCAGTTATCCTAAAGTGCATTCCCGTCGAACCAACAAAGTACACAGCCATTGCCAAGCATCACGATGGCTATGAACCACTCCCAAGTGGTCCGGACCGGGCATGA | 3111 | 0.4423 | MEKYLRENFDVEPKRASEEARRRWRSAVSVVKNPRRRFRMVADLAKRSETERKRQKIQEKIRVALYVQKAALHFIEAGHRIEYNLSEEVRQAGYEIEPDELASIVRAHDIKGLEFNGGAEGLAGKVCVSLDTGVKTSEVHSRQSIYGLNQYVEKPSGTFWMFIWEALQDLTLIILMVCAAVSIGVGIATEGWPKGMYDGLGIVLSIFLVVMVTATSDYKQSLQFKDLDKEKKNIIVQVTRDGYRQKISIYDLVVGDIVHLSIGDQVPADGVFISGHSLSIDESSLSGESEPVNINKQRPFLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNGVATIIGKIGLAFAVLTFLVLMGRFLLQKALHSNITDWSFSDAVTILNYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNAKALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKSKAIETNDSKDVFQSLIPEKVYSILLQSIFQNTGSEVVKGKDGKVSVLGTPTETAILEFGLHLGGESAHYKESEIVKVEPFNSVKKKMSVLVSLPAGGFRAFCKGASEIVLEMCDKIINTNGEFVSLSADQRKNITDVINGFACEALRTLCLAFKDIENSSKDDDIPYSNYTLIAVLGIKDPVRPGVKDAVRTCLAAGITVRMVTGDNINTAKAIAKECGILTDDGLAIEGPDFRNKSPQEMKELIPKLQVMARSLPLDKHTLVSQLRNSFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRSVYINIQKFVQFQLTVNIVALMINFVSACISGSAPLTAVQLLWVNMIMDTLGALALATEAPTDGLMKRAPVGRNANFITRTMWRNIIGQSIYQLAVLLVFTFQGKRLLKLTGSDASKILNTFIFNAFVFCQVFNEINSRDMEKINVFQDMFSNWIFIIIVVSSVTFQAIMVEFLGTFAGTVPLSWELWLLSILIGAVSLIIAVILKCIPVEPTKYTAIAKHHDGYEPLPSGPDRA* | 1037 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g1293 | 1036 | FunFam | Calcium-transporting ATPase | 16 | 76 | - | - | |
| Vvi13g1293 | 1036 | Pfam | E1-E2 ATPase | 235 | 428 | - | - | |
| Vvi13g1293 | 1036 | Gene3D | - | 165 | 1009 | - | - | |
| Vvi13g1293 | 1036 | Gene3D | - | 447 | 795 | IPR023214 | - | |
| Vvi13g1293 | 1036 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 452 | 458 | IPR018303 | - | |
| Vvi13g1293 | 1036 | Pfam | Cation transporter/ATPase, N-terminus | 116 | 182 | IPR004014 | - | |
| Vvi13g1293 | 1036 | Gene3D | - | 132 | 333 | - | - | |
| Vvi13g1293 | 1036 | SUPERFAMILY | HAD-like | 449 | 855 | IPR036412 | - | |
| Vvi13g1293 | 1036 | Gene3D | - | 460 | 654 | IPR023299 | GO:0000166 | |
| Vvi13g1293 | 1036 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 109 | 1012 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Vvi13g1293 | 1036 | SFLD | Haloacid Dehalogenase | 432 | 802 | - | - | |
| Vvi13g1293 | 1036 | SMART | Cation_ATPase_N_a_2 | 118 | 187 | IPR004014 | - | |
| Vvi13g1293 | 1036 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 49 | IPR024750 | GO:0005516 | |
| Vvi13g1293 | 1036 | Gene3D | - | 16 | 77 | - | - | |
| Vvi13g1293 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 750 | 766 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi13g1293 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 782 | 807 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi13g1293 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 607 | 625 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi13g1293 | 1036 | Pfam | haloacid dehalogenase-like hydrolase | 448 | 764 | - | - | |
| Vvi13g1293 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 720 | 838 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi13g1293 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 202 | 525 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi13g1293 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 543 | 695 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vvi13g1293 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 450 | 464 | - | - | |
| Vvi13g1293 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 658 | - | - | |
| Vvi13g1293 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 774 | 786 | - | - | |
| Vvi13g1293 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 281 | 295 | - | - | |
| Vvi13g1293 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 669 | 679 | - | - | |
| Vvi13g1293 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 750 | 769 | - | - | |
| Vvi13g1293 | 1036 | FunFam | Calcium-transporting ATPase | 767 | 1013 | - | - | |
| Vvi13g1293 | 1036 | FunFam | Calcium-transporting ATPase | 648 | 795 | - | - | |
| Vvi13g1293 | 1036 | PANTHER | CATION TRANSPORTING ATPASE | 68 | 1011 | - | - | |
| Vvi13g1293 | 1036 | SUPERFAMILY | Calcium ATPase, transduction domain A | 234 | 329 | IPR008250 | - | |
| Vvi13g1293 | 1036 | FunFam | Calcium-transporting ATPase | 165 | 222 | - | - | |
| Vvi13g1293 | 1036 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 116 | 1011 | IPR023298 | - | |
| Vvi13g1293 | 1036 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 456 | 659 | IPR023299 | GO:0000166 | |
| Vvi13g1293 | 1036 | CDD | P-type_ATPase_Ca_PMCA-like | 142 | 883 | - | - | |
| Vvi13g1293 | 1036 | SFLD | p-type atpase | 432 | 802 | IPR044492 | - | |
| Vvi13g1293 | 1036 | FunFam | Calcium-transporting ATPase | 460 | 654 | - | - | |
| Vvi13g1293 | 1036 | FunFam | Calcium-transporting ATPase | 213 | 333 | - | - | |
| Vvi13g1293 | 1036 | Pfam | Cation transporting ATPase, C-terminus | 835 | 1008 | IPR006068 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi13g1293 | Vvi-Chr13 | 21215161 | 21233597 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi13g1293 | 57 | 1033 | Primary Pumps ATPases | AT3G57330 | 71.984 | 0.0 | 1456 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi13g1293 | K01537 | - | vvi:100246545 | 1976.83 |