Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1286 ATGGCTACCAACCAACCTCACACTTCTCAGCACCAATTGCATCTCTCACTTCTGCCTTCGGCTGTATTTTGCAGAGTTGTTGATTCCTTGGTTTCCAAAGAAAACATGATTGTAGTTGAGGCGTTTCTGTCTTCCTTGTTTGAGGTGGTGCTGGACAAGCTGGTGGTCACCCCTTTGTTAGAGTATGCACGGCGGCTGAAAGTCGACACAACACCACTCCAGGACTGGAAGACGACTTTGTTGCAAATCAAATCAGTGCTGCATGATGCTGAGCAGAAACAGATTCAGGATGATGCGGTGATGGGGTGGTTGGATGATCTCAAAGCTTTAGCTTGCGACATTGAAGATGTCCTGGACGAAATTGACACCGAAGCTAAGCGATGCAGTTTGGTACAAGGACCTCAAACCAGCAACAGCAAGGTACGGAAGCTCATCCCTTCTTTTCATCATAGCAGTTTCAATAAGAAGATTTGTAAAAAGATGAAGACAATCACCAAGGAGTTAGATGCTATTGTAAAGCAAAAGACTGTCCTTGGTTTGAGAGAGGTTTTTGGAGAGGGGCCATCGGACCACAGGAGAGACCGTCATGAAGGGGTGTCATCTGTCAATCAAGAAAGGCGGACTACTTGTCTTGTAACAGAGTCTGAGGTTTATGGTAGGGGGGCCGATAAGGAGAAGATCATGGAGTTATTGCTATCAGATGAAGTAGGTACTGCTCGTGAAGTTCAGGTGATTCCAATTGTTGGTATGGGTGGGGTTGGAAAAACAACCCTTGCTCAGATTATCTATAACGACAAGAGGGTGGAGAAAAATTTCCAAATCCGTGGCTGGGCATACGTATCTGATCAGTTTCATTCAGTAAAAGTAACCCAACAAATTTTAGAGTCTGTCTCCGGTCGTTCATCTGATTCTGACGACTTACAGTTGCTACAACAGAGTTTGCAGAAAAAGTTGAAACGAAAAAGGTTTTTCCTTGTATTGGATGATATATGGATCGAGAACCCCAATACCTGGAGTGATTTACAAGCTCCACTAAAAGACGGAGCAGCAGGCAGTGTCATCATGGTAACCACTCGTTCTAAAAGTGTTGCATCCATCATGTGCACTACTCCTATTCAGCCTCTTAGTGAACTTTCTGAGGAAGATTGCAGGTCACTATTTGCACATATTGCCTTTGTAAACATAACTCCAGATGCGCGCCAAAACTTGGAACCTATTGGCAGAAAAATAATAACCAAATGCAAAGGTTTGCCTTTGGCTGTAAAGACATTGGCAGGTCTGTTGCGTTGTAATCAAGACGACAAGGCTTGGAAGAAGATGCTGAATGACGAAATATGGGATTTACCGCCTCAGAAGAGTAGCATTCTTCCAGCTCTTCGCTTGAGCTACCATTATCTCCCCTCTAAATTGAAGCAATGCTTTGCATATTGCTCCATCTTTCCCAAGAATTATGAGTTTAACAAGGAGGAGTTAATTTTATTATGGGTGGCACAAGGTTTTTTGGGTGGCTTAAAAAGAGGGGAGACAATAAAAGATGTTGGCCAAACATGTTTTGATGACCTATTATCAAGGTCGTTCTTTCAACAATCTGGTGGGAATAATTCATTGTTTGTGATGCATGATTTGATTCATGATGTGGCGCGATTTGTATCTAGAAATTTTTGTTTAAGATTGGACGTTGAAAAGCAAGACAATATTTCAGAGAGGACTCGACATATATCATACATTCGTGAGGAATTCGATGTCTCCAAGAGATTTGATGCCCTTCGTAAAACTAATAAGTTACGAACGTTCCTACCATCAAGTATGCCTCGTTATGTTTCAACTTGCTACTTTGCTGATAAAGTCTTATGTGATCTATTGCCAAAATTAGTATGTTTGCGGGTTTTATCCTTGTCTCACTATAATATCACTCATTTGCCTGATTCATTTGGGAATTTAAAACATTTACGCTATTTGAACCTTTCTAACACCAGGGTACAAAAGTTACCTAAATCAATAGGTATGCTTTTGAATTTGCAATCACTGGTGTTGTCAAATTGTCGTGGGCTTACCGAGTTGCCAATTGAAATTGTAAAACTCATCAACTTGCTTCATTTGGATATTTCTAGAACAAATATACAACAGATGCCACCAGGAATTAACAGACTAAAAGATCTTCAGAGATTGACCACTTTTGTTGTTGGTGAGCATGGTTGCGCAAGAGTTAAGGAGTTAGGAGACCTTTCACACCTACAAGGATCACTCTCCATTTTAAACTTGCAGAATGTACCGGTGAATGGTAACGATGCTTTAGAGGCTAATTTGAAGGAAAAGGAAGACCTCGATGCCTTGGTGTTTACATGGGATCCGAATGCAATTAATAGTGATTTGGAGAATCAAACCAGAGTTCTCGAAAACCTTCAACCTCATAACAAGGTGAAAAGGTTGAGCATTGAATGCTTCTATGGTGCAAAATTTCCAATTTGGTTAGGAAATCCTTCATTCATGAATTTAGTTTTCTTACGACTTAAAGATTGTAAAAGTTGCTCATCCTTGCCACCACTGGGGCAGTTACGGTCTCTCAAGGATCTCTATATTGTGAAGATGGATAGAGTACAGAAGGTTGGTGCAGAGTTGTATGGGAATAATGGTTGTGGTTCATCTTCAATTAAGCCATTTGGATCTTTAGCGATTCTGTGGTTTCAAGAGATGTTAGAGTGGGAGGAATGGGTGTGTTCTGAAGTTGAGTTCCCTTGTCTAAAGGAGCTTCATATTGTAAAATGTCCAAAGCTGAAAGGGGATATACCTAAGTACCTTCCTCAACTAACAGATCTTGAGATTAGTGAATGTTGGCAGTTGGTGTGTTGTCTTCCAATAGCTCCCTCCATTTGTGAATTGATGTTGAATAAATGTGATGATGTGATGGTTAGAAGTGTGGGCAGCCTTACTTCACTAACTTCCTTGGGTCTAAGTGATGTATGTAAAATACCAGTTGAATTGGGACTACTACATTCTCTTGGAGAGTTGTCTGTGTATGGTTGTTCAGAGCTAGAGGAATTGCCAACTATTCTTCACAACCTGACTTCTCTTAAACACTTGGAAATATACCCAGATGACAGTCTTTCGTCTTTTACGGATATTGGGCTGCCACCCGTGCTTGAAACCCTTGGAATTGGACGCTGGCCCTTTCTGGAGTACCTACCAGAGGGAATGATGCAAAATAATACTACTCTCCAACACTTGCATATCTTAGAGTGTGGTTCTCTGAGGTCCTTGCCGGGGGACATTATTAGTTCATTGAAAAGCCTTTTTATCGAGGGTTGTAAGAAATTGGAGTTACCAGTGCCTGAGGATATGACGCACAACTACTACGCTTCCCTTGCGCATTTAGTAATAGAAGAGAGTTGTGATTCTTTCACGCCCTTTCCATTAGCCTTCTTCACAAAGCTTGAGATTCTTTATATCCGAAGTCATGAAAATCTGGAGTCCCTTTACATTCCAGATGGACCTCACCATGTGGATCTCACATCTCTTCAGGTCATCTACATCGACAATTGCCCTAATCTGGTAGCTTTTCCACAAGGAGGATTGCCTACTCCTAACCTCAGATATCTTACAATAATCAAGTGCGAGAAGCTCAAGTCCCTACCCCAAGGGATGCAAACCCTCCTTACATCCCTTGAACAATTGACTGTATGCTATTGTCCAGAAATTGATTCATTTCCAGAAGGGGGTTTGCCCTCCAATCTATCTTCGCTTTATATATGGGATTGCTACAAACTCATGGCCTGTGAGATGAAGCAAGGCTTACAAACGCTTTCCTTTCTTACATGGCTCTCTGTTAAAGGATCTAAAGAAGAGAGATTGGAGTCATTTCCAGAGGAGTGGCTACTGCCCTCCACTCTTCCCTCTCTTGAAATTGGCTGTTTTCCAAAACTCAAATCCTTGGATAATATGGGGCTTCAACACCTCACGTCTCTTGAAAGATTGACGATAGAGGAGTGTAATGAGCTCGATTCTTTTCCGAAACAGGGGCTGCCCTCTTCCCTTTCTCGTCTTTATATTAGAAAGTGTCCTCGGCTAAAGATAGAGTGCCAAAGAGATAAAGGGAAAGAATGGCCCAAGATTTCTCGCATCCCCTGCATAGTATTAGAAAGACGTGATGTGAAAGATGAGGAGGTGATCTTGGCATGA 4176 0.4171 MATNQPHTSQHQLHLSLLPSAVFCRVVDSLVSKENMIVVEAFLSSLFEVVLDKLVVTPLLEYARRLKVDTTPLQDWKTTLLQIKSVLHDAEQKQIQDDAVMGWLDDLKALACDIEDVLDEIDTEAKRCSLVQGPQTSNSKVRKLIPSFHHSSFNKKICKKMKTITKELDAIVKQKTVLGLREVFGEGPSDHRRDRHEGVSSVNQERRTTCLVTESEVYGRGADKEKIMELLLSDEVGTAREVQVIPIVGMGGVGKTTLAQIIYNDKRVEKNFQIRGWAYVSDQFHSVKVTQQILESVSGRSSDSDDLQLLQQSLQKKLKRKRFFLVLDDIWIENPNTWSDLQAPLKDGAAGSVIMVTTRSKSVASIMCTTPIQPLSELSEEDCRSLFAHIAFVNITPDARQNLEPIGRKIITKCKGLPLAVKTLAGLLRCNQDDKAWKKMLNDEIWDLPPQKSSILPALRLSYHYLPSKLKQCFAYCSIFPKNYEFNKEELILLWVAQGFLGGLKRGETIKDVGQTCFDDLLSRSFFQQSGGNNSLFVMHDLIHDVARFVSRNFCLRLDVEKQDNISERTRHISYIREEFDVSKRFDALRKTNKLRTFLPSSMPRYVSTCYFADKVLCDLLPKLVCLRVLSLSHYNITHLPDSFGNLKHLRYLNLSNTRVQKLPKSIGMLLNLQSLVLSNCRGLTELPIEIVKLINLLHLDISRTNIQQMPPGINRLKDLQRLTTFVVGEHGCARVKELGDLSHLQGSLSILNLQNVPVNGNDALEANLKEKEDLDALVFTWDPNAINSDLENQTRVLENLQPHNKVKRLSIECFYGAKFPIWLGNPSFMNLVFLRLKDCKSCSSLPPLGQLRSLKDLYIVKMDRVQKVGAELYGNNGCGSSSIKPFGSLAILWFQEMLEWEEWVCSEVEFPCLKELHIVKCPKLKGDIPKYLPQLTDLEISECWQLVCCLPIAPSICELMLNKCDDVMVRSVGSLTSLTSLGLSDVCKIPVELGLLHSLGELSVYGCSELEELPTILHNLTSLKHLEIYPDDSLSSFTDIGLPPVLETLGIGRWPFLEYLPEGMMQNNTTLQHLHILECGSLRSLPGDIISSLKSLFIEGCKKLELPVPEDMTHNYYASLAHLVIEESCDSFTPFPLAFFTKLEILYIRSHENLESLYIPDGPHHVDLTSLQVIYIDNCPNLVAFPQGGLPTPNLRYLTIIKCEKLKSLPQGMQTLLTSLEQLTVCYCPEIDSFPEGGLPSNLSSLYIWDCYKLMACEMKQGLQTLSFLTWLSVKGSKEERLESFPEEWLLPSTLPSLEIGCFPKLKSLDNMGLQHLTSLERLTIEECNELDSFPKQGLPSSLSRLYIRKCPRLKIECQRDKGKEWPKISRIPCIVLERRDVKDEEVILA* 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1286 1391 SUPERFAMILY L domain-like 1135 1373 - -
Vvi13g1286 1391 Gene3D Ribonuclease Inhibitor 605 959 IPR032675 -
Vvi13g1286 1391 FunFam Probable disease resistance protein At1g61300 199 371 - -
Vvi13g1286 1391 Gene3D - 200 371 IPR027417 -
Vvi13g1286 1391 PRINTS Disease resistance protein signature 244 259 - -
Vvi13g1286 1391 PRINTS Disease resistance protein signature 414 428 - -
Vvi13g1286 1391 PRINTS Disease resistance protein signature 317 331 - -
Vvi13g1286 1391 PRINTS Disease resistance protein signature 668 684 - -
Vvi13g1286 1391 FunFam Probable disease resistance protein At1g63360 463 549 - -
Vvi13g1286 1391 Pfam NB-ARC domain 224 442 IPR002182 GO:0043531
Vvi13g1286 1391 SUPERFAMILY L domain-like 538 948 - -
Vvi13g1286 1391 Gene3D Ribonuclease Inhibitor 960 1239 IPR032675 -
Vvi13g1286 1391 Gene3D - 462 549 IPR036388 -
Vvi13g1286 1391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 477 IPR027417 -
Vvi13g1286 1391 Gene3D Ribonuclease Inhibitor 1240 1363 IPR032675 -
Vvi13g1286 1391 SUPERFAMILY L domain-like 956 1230 - -
Vvi13g1286 1391 PANTHER DISEASE RESISTANCE PROTEIN RP 73 944 IPR044974 GO:0006952
Vvi13g1286 1391 Gene3D - 47 168 - -
Vvi13g1286 1391 Gene3D - 377 461 IPR042197 -
Vvi13g1286 1391 SMART LRR_typ_2 647 670 IPR003591 -
Vvi13g1286 1391 SMART LRR_typ_2 694 717 IPR003591 -
Vvi13g1286 1391 SMART LRR_typ_2 624 646 IPR003591 -
Vvi13g1286 1391 Pfam Rx N-terminal domain 39 139 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1286 Vvi-Chr13 21154357 21160200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1286 241 881 WRKY Transcription Factor Family AT5G45050 24.460 1.02e-15 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1286 - - vvi:100241409 2676.35