Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1284 ATGGTTGTGGTGGAGGCGTTTCTGTCTTCCTTGTTTGAGGTGGTGCTGGACAAGCTGGTGGCTGCCCCTTTGTTAGATTATGCACGCCAGCTCAAAGTAGACACAGCAGTGCTCCAGGAGTGGAGGAACACTTTGTTGCAGCTCCAAGCAGTGCTACATGATGCTGAGCAGAGGCAGATTCAGGACGAAGCAGTGAAGAGGTGGCTGGACGATCTCAAAGCTTTAGCTTACGACATTGAAGATGTCCTTGACGAGTTTGAAGCTGAAGCTAAGCGGCCCAGTTCGGTACAAGGACCTCAAACCAGCAGCAGCAGCAGCAGCGGCAAGGTATGGAAGTTCAACCTCTCTTTTCATCCTAGCGGTGTGATTTCCAAAAAGAAGATTGGTCAAAAAATAAAGATAATCACCCAAGAGCTAGAGGCTATTGTAAAAAGAAAGTCTTTCCTTCGTTTGAGTGAGAGTGTTGGAGGGGTGGCATCAGTAACTGATCAACAAAGGCTGACTACTTTCTTGGTAGATGAGGTTGAGGTTTATGGCAGGGATGGTGATAAGGAGAAGATCATAGAATTGTTGCTGTCTGATGAACTAGCTACTGCTGATAAAGTTCAGGTGATTCCAATTGTTGGTATGGGTGGGGTTGGAAAAACAACCCTTGCTCAAATCATCTATAACGATGACAAGATGCAGGACAAGTTCGATTTCCGAGTCTGGGTGTGCGTGTCTGATCAATTCGATTTGATAGGAATAACAAAAAAAATTTTAGAGTCAGTCTCTGGCCATTCATCCCATTCTGAAAACTTGTCATTGCTGCAAGCTAGTTTGCAGAAAGAGTTGAATGGAAAAAGGTTTTTCCTTGTGCTGGATGATATATGGAATGAGAACCCCGATAACTGGAGTACCTTACAAGCCCCACTCAAAGCTGGAGCACTGGGCAGTGTAATCATAGCAACCACCCGCAATGAAAAAGTAGCATCAATTATGGGCACAACTCCTTTTTGTCGTCTTAGCGAACTATCAGATGAACATTGCTGGTCAGTATTTGCATATCGTGCCTTCGAAAATATAACTCCAGATGCAATAAAAAATTTGGAACCTATTGGTCGGAAAATAGTACAGAAATGCAAAGGTTTGCCCTTGGCAGCAAAAACGCTAGGAGGTTTATTGCGGTCTGAACAAGATGAAAAGGCTTGGAAGGAAATGATGAATAACAAAATATGGGATTTACCAACGGAACAGTGTAACATTTTTCCAGCTCTACACTTGAGCTATCATTATCTCCCCACAAAAGTAAAGCAGTGTTTTGCATATTGCTCCATCTTTCCCAAGGATTATGAATATCAAAAGGAGGAGTTAATTTTGTTATGGGCGGCACAAGGTTTTGTGGGTGACTTCAAAGGAGAGGAGATGATAGAAGATGGTGAAAAATGTTTTCGGAACCTATTGTCAAGGTCATTCTTTCAACAATCAAGTCAAAATAAGTCATTGTTGGTGATGCATGATTTGATTCATGATTTGGCCCAATTTGCATCTAGAGAATTTTGTTTCAGATTGGAAGTGGGAAAGCAAAAAAACTTTTCAAAGAGGGCTCGACATTTGTCATACATCCATGAACAATTCGATGTCTCCAAGAAATTTGATCCCCTTCGTAAGGTTGATAAGTTACGGACCTTCCTACCATTAGTTATGCCTGCAGCTTATGTTCCAACTTGCTACTTAGCTGATAAAGTTCTACATGATCTATTGCCAACATTCAGATGTTTGCGGGTTTTATCCTTGTCTCACTATAATATCACTCATTTACCTGATTCATTTCAAAATTTGAAGCATTTGCAGTATTTGAACCTTTCTAGCACCAAGATAAAGAAGTTACCTAAATCCATAGGTATGCTTTGCAATTTGCAATCACTGATGTTGTCAAATTGTCATGGGATTACCGAGCTGCCTCCTGAAATCGAAAACCTCATCCACCTACATCATTTGGATATTTCTGGAACCAAATTAGAAGGGATGCCAATAGGAATCAATAAACTAAAAGATCTTCGAAGATTGACTACTTTTGTTGTTGGCAAGCATAGTGGTGCAAGAATTGCAGAGTTACAAGATCTGTCCCATCTGCAGGGAGCACTCTCCATTTTTAACTTGCAAAATGTGGTGAATGCTACGGATGCTTTAAAAGCTAATTTGAAGAAAAAGGAAGACCTTGATGACTTGGTGTTTGCGTGGGATCCAAATGTGATTGATAGTGATTCGGAGAATCAAACCAGAGTTCTCGAAAATCTTCAGCCTCATACCAAGGTGAAAAGGCTCAACATTCAACACTACTATGGCAGAAAATTTCCAAAATGGTTTGGAGATCCTTCATTCATGAATTTAGTTTTCTTACGACTTGAAGATTGTAACAGTTGCTCGTCCTTGCCACCACTTGGGCAGTTACAATCTCTCAAGGATCTCCAGATTGCGAAGATGGATGGAGTACAAAACGTTGGTGCAGATTTCTATGGGAATAATGATTGTGACTCATCTTCAATTAAGCCGTTTGGATCCCTAGAGATTCTGAGGTTTGAAGATATGTTGGAGTGGGAAAAATGGATTTGTTGTGACATTAAGTTTCCTTGTCTGAAGGAGCTTTATATCAAGAAATGTCCAAAGCTGAAAGGAGATATACCTAGGCACCTTCCTCTTTTAACAAAATTGGAGATTAGTGAAAGTGGGCAGCTGGAGTGTTGTGTTCCAATGGCTCCCTCTATTCGTGAATTGATGTTGGAGGAATGTGATGATGTGGTGGTTAGAAGTGTTGGCAAGCTCACCTCACTAGCTTCTTTGGGCATAAGCAAAGTTTCTAAAATACCAGATGAATTGGGACAACTGCATTCTCTTGTAAAGTTGTCTGTGTGTCGTTGTCCCGAGCTAAAGGAAATTCCACCAATTCTTCACAACCTTACATCTCTTAAACACTTGGTGATCGATCAATGTAGGAGTCTTTCATCTTTTCCGGAGATGGCGCTGCCACCCATGCTTGAAAGGCTTGAAATCAGAGACTGTCGCACTCTGGAGTCCCTACCAGAGGGAATGATGCAAAATAATACGACTCTGCAATACTTGGAAATCCGTGATTGTTGTTCTCTGAGGTCCTTGCCCAGGGACATTGATTCATTGAAGACACTTGCAATCTACGAGTGTAAGAAATTGGAGTTAGCACTCCACGAGGATATGACGCACAACCACTACGCTTCCCTTACCAACTTCATGATATGGGGTATTGGTGATTCTCTGACGTCCTTTCCATTAGCCTCCTTCACAAAGCTTGAGACGCTTGAATTATGGGATTGTACAAATCTGGAGTACCTTTACATTCCAGATGGACTTCACCACGTGGATCTCACATCTCTCCAGATATTATATATCGCTAATTGCCCTAATCTGGTATCTTTTCCGCAAGGAGGATTGCCCACTCCTAATCTGACATCTCTTTGGATAAAAAACTGCAAGAAGCTCAAGGGGTTTGCCCACTAA 3513 0.4162 MVVVEAFLSSLFEVVLDKLVAAPLLDYARQLKVDTAVLQEWRNTLLQLQAVLHDAEQRQIQDEAVKRWLDDLKALAYDIEDVLDEFEAEAKRPSSVQGPQTSSSSSSGKVWKFNLSFHPSGVISKKKIGQKIKIITQELEAIVKRKSFLRLSESVGGVASVTDQQRLTTFLVDEVEVYGRDGDKEKIIELLLSDELATADKVQVIPIVGMGGVGKTTLAQIIYNDDKMQDKFDFRVWVCVSDQFDLIGITKKILESVSGHSSHSENLSLLQASLQKELNGKRFFLVLDDIWNENPDNWSTLQAPLKAGALGSVIIATTRNEKVASIMGTTPFCRLSELSDEHCWSVFAYRAFENITPDAIKNLEPIGRKIVQKCKGLPLAAKTLGGLLRSEQDEKAWKEMMNNKIWDLPTEQCNIFPALHLSYHYLPTKVKQCFAYCSIFPKDYEYQKEELILLWAAQGFVGDFKGEEMIEDGEKCFRNLLSRSFFQQSSQNKSLLVMHDLIHDLAQFASREFCFRLEVGKQKNFSKRARHLSYIHEQFDVSKKFDPLRKVDKLRTFLPLVMPAAYVPTCYLADKVLHDLLPTFRCLRVLSLSHYNITHLPDSFQNLKHLQYLNLSSTKIKKLPKSIGMLCNLQSLMLSNCHGITELPPEIENLIHLHHLDISGTKLEGMPIGINKLKDLRRLTTFVVGKHSGARIAELQDLSHLQGALSIFNLQNVVNATDALKANLKKKEDLDDLVFAWDPNVIDSDSENQTRVLENLQPHTKVKRLNIQHYYGRKFPKWFGDPSFMNLVFLRLEDCNSCSSLPPLGQLQSLKDLQIAKMDGVQNVGADFYGNNDCDSSSIKPFGSLEILRFEDMLEWEKWICCDIKFPCLKELYIKKCPKLKGDIPRHLPLLTKLEISESGQLECCVPMAPSIRELMLEECDDVVVRSVGKLTSLASLGISKVSKIPDELGQLHSLVKLSVCRCPELKEIPPILHNLTSLKHLVIDQCRSLSSFPEMALPPMLERLEIRDCRTLESLPEGMMQNNTTLQYLEIRDCCSLRSLPRDIDSLKTLAIYECKKLELALHEDMTHNHYASLTNFMIWGIGDSLTSFPLASFTKLETLELWDCTNLEYLYIPDGLHHVDLTSLQILYIANCPNLVSFPQGGLPTPNLTSLWIKNCKKLKGFAH* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1284 1170 Coils Coil 69 89 - -
Vvi13g1284 1170 PRINTS Disease resistance protein signature 277 291 - -
Vvi13g1284 1170 PRINTS Disease resistance protein signature 374 388 - -
Vvi13g1284 1170 PRINTS Disease resistance protein signature 978 994 - -
Vvi13g1284 1170 PRINTS Disease resistance protein signature 204 219 - -
Vvi13g1284 1170 PANTHER DISEASE RESISTANCE PROTEIN RP 38 892 IPR044974 GO:0006952
Vvi13g1284 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 437 IPR027417 -
Vvi13g1284 1170 ProSiteProfiles Leucine-rich repeat profile. 609 630 IPR001611 GO:0005515
Vvi13g1284 1170 Pfam NB-ARC domain 193 403 IPR002182 GO:0043531
Vvi13g1284 1170 SUPERFAMILY L domain-like 908 1166 - -
Vvi13g1284 1170 Gene3D Ribonuclease Inhibitor 1056 1170 IPR032675 -
Vvi13g1284 1170 Gene3D Ribonuclease Inhibitor 567 923 IPR032675 -
Vvi13g1284 1170 Gene3D Ribonuclease Inhibitor 924 1055 IPR032675 -
Vvi13g1284 1170 Pfam Leucine rich repeat 587 620 IPR001611 GO:0005515
Vvi13g1284 1170 Gene3D - 422 508 IPR036388 -
Vvi13g1284 1170 SMART LRR_typ_2 584 606 IPR003591 -
Vvi13g1284 1170 SMART LRR_typ_2 607 629 IPR003591 -
Vvi13g1284 1170 SMART LRR_typ_2 630 653 IPR003591 -
Vvi13g1284 1170 SMART LRR_typ_2 654 677 IPR003591 -
Vvi13g1284 1170 Gene3D - 160 330 IPR027417 -
Vvi13g1284 1170 Gene3D - 337 421 IPR042197 -
Vvi13g1284 1170 SUPERFAMILY L domain-like 490 940 - -
Vvi13g1284 1170 Gene3D - 12 118 - -
Vvi13g1284 1170 FunFam Probable disease resistance protein At1g61300 159 331 - -
Vvi13g1284 1170 Pfam Rx N-terminal domain 4 102 IPR041118 -
Vvi13g1284 1170 Coils Coil 38 58 - -
Vvi13g1284 1170 FunFam Probable disease resistance protein At1g63360 423 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1284 Vvi-Chr13 21130373 21133974 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1284 202 671 WRKY Transcription Factor Family AT5G45050 23.962 1.87e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1284 - - vvi:100253382 2224.51