Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1276 ATGTTTGTGGGTGAGGTATTTCTGTCTTCCTTCTTTGAGGTGGTGCTGGACAAGCTGGTGGCTACCCCGCTGTTGGAGTATGCGCGCCGGCAGAAGGTTGAGTCAACACTGGAAGACTGGAGGAAGACTTTGTTGCATCTCCAAGCAGTGGTGAATGATGCAGAGCAGAAGCAGATCAAGGATACAGCAGTGAAGATGTGGCTGGATGATCTTAAAGCTTTGGCTTACGACATTGAAGACGTCCTGGATGAGTTTGATAGCGAAGCTAGGCGGCGAAGTTTGGTGGAAGGATCAGGTCAAACCAGCACCAGTAAGGTACGGAGGCTCATCCCAACTTTTCATTCTAGCGGTGTGAGGTCTAATGACAAGATTCGTAAAAAGATGAAGAAAATCAACCAGGAGTTGGATGCTGTCGTGAAAAGAAAATCTGACCTTCATCTAAGAGAGGGAGTTGGGGGAGTTTCAACTGTGAATGAAGAAAGGTTGACTACTTCTTCTGTAGATGAGTTTGAGGTTTATGGTAGGGAGGCCGATAAGGAGAAGATCATGCAGTCATTGCTATCAGATGAAGGACATGGTACGGGTCGTAAAGTTAGGGTGATTCCGATTGTTGGTATGGGTGGGGTTGGTAAAACAACCCTAGCTCAAATGATCTATAATGACGGGAGGGTGAAGGACGAATTCGATTTCAGAGTCTGGGTGTACGTGTCTGATCAATTTGATTTGGTTGGAATAACAAGAGCAATTTTAGAATCTGTCTCTGGACATTCATCTGATTCTAAAAACTTACCATTGCTAGAAGACAAGTTGCAGAAAGAACTGAATGGAAAAAGGTTTTTCCTTGTTTTGGATGATATGTGGAACCAGGACCCTATACGCTGGAGTGGCTTAGAAAAGACCCTCAGAGCAGGAGCACGAGGCAGTGTGGTAATGGTAACAACTCGCCATGAAGATGTTGCATCAATTATGCGCACGACTCCTTCTCATCATCTTAGTGAACTGTCAGATGAACATTGTTGGTTAGTCTTTGCAGATCTTGCCTTCGAAAACATAACTCCAGATGCCCGCCAAAACTTGGAACCTATTGGTAGGCAAATATTCAAGAAATGCAAAGGATTGCCTCTGGCAGCAAAGACGCTCGGAGGTCTACTGCGCTCTAAACACGACAAAAATGCTTGGAAGAATATGTTGAACAGCGAAATATGGGATTTACCAGCGGAACAAAGTAGCATTCTTCCAGTTCTACACTTGAGCTACCATTATCTCCCCTCAATACTGAAACAATGTTTTGCATATTGCTCCATTTTTCCTAAGGATCATGAATTTCAAAAGGAGGAGTTAATTTTGTTTTGGGTGGCACAAGGATTAGTGGGTGGCTTGAAAGGGGGGGAGATAATGGAAGAGGTGGGTGAAGCTTGTTTTCACAATCTGTTATCAAGGTCCTGTTAG 1449 0.4424 MFVGEVFLSSFFEVVLDKLVATPLLEYARRQKVESTLEDWRKTLLHLQAVVNDAEQKQIKDTAVKMWLDDLKALAYDIEDVLDEFDSEARRRSLVEGSGQTSTSKVRRLIPTFHSSGVRSNDKIRKKMKKINQELDAVVKRKSDLHLREGVGGVSTVNEERLTTSSVDEFEVYGREADKEKIMQSLLSDEGHGTGRKVRVIPIVGMGGVGKTTLAQMIYNDGRVKDEFDFRVWVYVSDQFDLVGITRAILESVSGHSSDSKNLPLLEDKLQKELNGKRFFLVLDDMWNQDPIRWSGLEKTLRAGARGSVVMVTTRHEDVASIMRTTPSHHLSELSDEHCWLVFADLAFENITPDARQNLEPIGRQIFKKCKGLPLAAKTLGGLLRSKHDKNAWKNMLNSEIWDLPAEQSSILPVLHLSYHYLPSILKQCFAYCSIFPKDHEFQKEELILFWVAQGLVGGLKGGEIMEEVGEACFHNLLSRSC* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1276 482 FunFam Probable disease resistance protein At1g61300 155 328 - -
Vvi13g1276 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 433 IPR027417 -
Vvi13g1276 482 PANTHER DISEASE RESISTANCE PROTEIN RP 37 481 IPR044974 GO:0006952
Vvi13g1276 482 Coils Coil 121 141 - -
Vvi13g1276 482 Coils Coil 37 57 - -
Vvi13g1276 482 Gene3D - 155 328 IPR027417 -
Vvi13g1276 482 Gene3D - 333 418 IPR042197 -
Vvi13g1276 482 Gene3D - 12 141 - -
Vvi13g1276 482 Gene3D - 419 482 IPR036388 -
Vvi13g1276 482 Pfam NB-ARC domain 176 419 IPR002182 GO:0043531
Vvi13g1276 482 PRINTS Disease resistance protein signature 273 287 - -
Vvi13g1276 482 PRINTS Disease resistance protein signature 370 384 - -
Vvi13g1276 482 PRINTS Disease resistance protein signature 200 215 - -
Vvi13g1276 482 Pfam Rx N-terminal domain 14 100 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1276 Vvi-Chr13 21080351 21081799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1276 198 387 WRKY Transcription Factor Family AT5G45050 25.641 9.88e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1276 - - vvi:100243138 958.747