Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1274 ATGGCCGAAGCAGTTCTATCTGCACTAGTAGAAGTAATATTCGAAAAGATGTCTTCGCAAATCCTGGAGTACAGAATGCTGGGAGGCACTGAGAAGGAGATGAGCCAGCTTCGGAGCATATTATTGACGATTCAAGATGTGCTTGAAGAGGCAGAAGACCAACAATTAAGGAATAAGACGGTGAAAAATTGGTTGATGAAGCTTAAGGATGCCGCTTATGATGCAGATGACTTGCTGGACGAGTACATGATGGAAGCTCTAGAGTATGAAGTAGGGGCTGATGATAACATGAAGTTCAAGGATTGCATGATTAATATGGTATGCAACTTCTTTTCACGGTCAAATCCGTTCATTTTCCATTACAAAATGAAATGCAGGTTAAAGCAGATAGGGGAGAGGTTAAATTCAATTGCAAATGAGAGGTCCAAATTTCATTTGAAAAATTCAAATGTTAATCAGACCTATCAGTCATCTGGGAGACTGCAGTCGGATTCTTTCTTGCTTGAATCTGATGTTTGTGGAAGAGACAGAGATAGAGAGGAAATAATTAAGCTACTGACAGATAATAGCCATGGGGATGTTTCAGTCATTCCAATAGTTGGTATAGGAGGGCTAGGGAAGACAACTCTCGCAAAACTGGCCTACAACGACAAACGGGCGGACAAGCATTTCCAGCAAAGAATCTGGGTTTGTGTCTCTGAAGATTTTGATGTGAAGCGGATTATGAGAGCAATTTTGGAATCTGCCACTGGGAATACATGTCATCTTCAAGAGATGGAAGTGATTCAGCAGCGCATTCGAGAATTGGTCATGGGGAAGAGGTTCTTACTAGTTTTGGATGATGTATGGAGCGATGATCATGACAAATGGGAGAGATTGAAGAATTCAGTGAGACATGGTTCTGAAGGTAGCAAAATCTTGGTTACAACTCGTAGTGAAAAGGTTGCACTGATAATGGGTACCATTTCCCCTTACTATTTAAAGGGCTTGCCAGAAGATGATTGTTGGTCTTTGTTTGAGCAGCGAGCTTTCAAGCTTGGGGTACCAAAAGAAGCTTCAATAGTTGCAATCGGAAACGATATTGTGAAGAAATGCAGGGGTGTACCTCTTGCAGCAAAGACTCTTGGAAGCTTGATGTGCTTCAAAAGAGAGAAAAGTGAGTGGGTAGATGTAAAAGATAGTGAAATATGGAACCTACTTGGAGGAGAAAATGGAATTCTACAAGTATTGAGACTCAGTTATGATGATCTACCATCACATCTGAAACAATGCTTTGCATACTGCTCCATTTTTCCCAAGGACTACTGCATAGAGAAGGAGAACTTGGTCCAGCTGTGGATGGCTGAAGGATTCCTTCCATCATCTGGAAGAAAGGCACCAGAAGAAGTTGGGAACGAGTACTTCAATGAGTTACTATGGAGGTCTTTCTTTGAGAATGTCACCAAGGACAGTGATGGTAACATAGTGAAATGTGGAATGCATCATCTTTTTCATGATCTTGCAAGATCTGTTTCAGGTTCAGATTGCTCAGCAGTAGAGGTTGGTAGGCAAGTAAGTATTCCTGCAGCCACACGGCACATATCAATGGTCTGTAAAGAGAGGGAATTTGTAATTCCAAAGTCCTTACTGAATGCTGGGAAAGTCCGCTCTTTCCTTCTATTAGTTGGGTGGCAAAAGATTCCCAAAGTATCTCATAATTTCATCTCAAGTTTCAAATCCTTGCGTGCTTTAGACATAAGCAGCACACGGGCTAAGAAGCTATCTAAGTCAATTGGGGCATTGAAACATTTAAGGTACCTCAATCTCTCAGGTGCTCGCATCAAAAAGTTACCAAGCTCTATTTGTGGTCTTTTGTATCTGCAGACATTGATACTCAAGCATTGTGACCTTCTGGAGATGCTACCGAAAGATTTGAGAAAGTTGATCTTCCTCAGACATCTAAATATTTATGCATGTAGATCATTGGTCAAGCTGCCAAATGGGATTGGAAAACTCAGCTCCCTTCAAACATTACCAATTTTCATAGTTGGTAGGGGAACTGCTTCTAGCATTGCTGAGTTGCAGGGCCTGGACCTGCATGGAGAATTAATGATTAAGAACCTTGAAAATGTGATGAATAAAAGATGTGCCAGAGCTGCAAATCTGAAGGAGAAGAGAAACCTTCGTTCACTGAAACTTTTATGGGAGCATGTTGATGAAGCGAATGTAAGAGAACATGTTGAGCTTGTCATTGAAGGCCTCCAACCAAGCTCTGATTTAAAGAAGCTGCATGTTGAGAATTATATGGGTGCAAATTTCCCATGTTGGCTGATGAATTCATCTCTCTCAAACCTCACTGAACTCTCACTAATCAGATGTCAAAGGTGTGTCCAACTTCCTCCATTAGAGAAGCTAAGTGTTCTTGAGGTTCTCTCAATAGATGGAATGGATGCCACAAGGTACATCTCTGATGACTCCCGCACAAATGATGGGGTTGTTGATTATGCATCATTGAAACATCTCACACTCAAAAATATGCCATCTTTATTGGGGTGGTCAGAAATGGAAGAAAGATATCTGTTTTCCAACCTGAAGAAATTGACAATTGTTGATTGCCCAAATATGACGGACTTCCCAAATCTTCCGTCTGTGGAATCTCTGGAGCTGAATGATTGCAACATCCAGTTATTAAGGATGGCAATGGTGAGCACTTCTCTTTCCAACCTCATCATCAGTGGCTTTTTAGAGCTAGTAGCTTTACCCGTTGGATTGCTAAGAAATAAAATGCATCTTTTGTCTCTTGAAATCAAAGACTGTCCAAAGCTCAGATCTCTCTCAGGTGAGCTTGAAGGTCTTTGTTCCCTTCAAAAATTGACAATTAGTAATTGTGACAAGCTAGAATCTTTTCTGGAGTCTGGAAGCCTCAAGTCTCTCATATCTTTGTCAATACATGGGTGCCACAGTCTAGAATCTCTGCCAGAAGCAGGGATTGGAGATCTCAAGTCCCTTCAAAATCTTTCACTCTCAAATTGTGAGAATCTAATGGGCTTGCCAGAGACTATGCAGCACCTTACAGGCCTCCAGATTCTATCCATTTCAAGTTGTTCCAAATTGGATACCCTTCCTGAGTGGCTGGGAAACCTTGTTTCACTCCAAGAGCTGGAGCTTTGGTATTGCGAAAATCTACTGCATCTGCCAGATTCAATGGTGAGACTCACAGCCCTTCAATTTCTATCGATATGGGGCTGTCCTCACTTGGAAATAATCAAGGAGGAAGGGGACGATTGGCACAAGATACAACATGTTCCATATATCAAGATTAATGGCCCTTATATTAAAGCTGCTGGAGTGTAG 3333 0.4149 MAEAVLSALVEVIFEKMSSQILEYRMLGGTEKEMSQLRSILLTIQDVLEEAEDQQLRNKTVKNWLMKLKDAAYDADDLLDEYMMEALEYEVGADDNMKFKDCMINMVCNFFSRSNPFIFHYKMKCRLKQIGERLNSIANERSKFHLKNSNVNQTYQSSGRLQSDSFLLESDVCGRDRDREEIIKLLTDNSHGDVSVIPIVGIGGLGKTTLAKLAYNDKRADKHFQQRIWVCVSEDFDVKRIMRAILESATGNTCHLQEMEVIQQRIRELVMGKRFLLVLDDVWSDDHDKWERLKNSVRHGSEGSKILVTTRSEKVALIMGTISPYYLKGLPEDDCWSLFEQRAFKLGVPKEASIVAIGNDIVKKCRGVPLAAKTLGSLMCFKREKSEWVDVKDSEIWNLLGGENGILQVLRLSYDDLPSHLKQCFAYCSIFPKDYCIEKENLVQLWMAEGFLPSSGRKAPEEVGNEYFNELLWRSFFENVTKDSDGNIVKCGMHHLFHDLARSVSGSDCSAVEVGRQVSIPAATRHISMVCKEREFVIPKSLLNAGKVRSFLLLVGWQKIPKVSHNFISSFKSLRALDISSTRAKKLSKSIGALKHLRYLNLSGARIKKLPSSICGLLYLQTLILKHCDLLEMLPKDLRKLIFLRHLNIYACRSLVKLPNGIGKLSSLQTLPIFIVGRGTASSIAELQGLDLHGELMIKNLENVMNKRCARAANLKEKRNLRSLKLLWEHVDEANVREHVELVIEGLQPSSDLKKLHVENYMGANFPCWLMNSSLSNLTELSLIRCQRCVQLPPLEKLSVLEVLSIDGMDATRYISDDSRTNDGVVDYASLKHLTLKNMPSLLGWSEMEERYLFSNLKKLTIVDCPNMTDFPNLPSVESLELNDCNIQLLRMAMVSTSLSNLIISGFLELVALPVGLLRNKMHLLSLEIKDCPKLRSLSGELEGLCSLQKLTISNCDKLESFLESGSLKSLISLSIHGCHSLESLPEAGIGDLKSLQNLSLSNCENLMGLPETMQHLTGLQILSISSCSKLDTLPEWLGNLVSLQELELWYCENLLHLPDSMVRLTALQFLSIWGCPHLEIIKEEGDDWHKIQHVPYIKINGPYIKAAGV* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1274 1110 SUPERFAMILY L domain-like 493 906 - -
Vvi13g1274 1110 Gene3D - 329 418 IPR042197 -
Vvi13g1274 1110 SUPERFAMILY L domain-like 853 1082 - -
Vvi13g1274 1110 PRINTS Disease resistance protein signature 269 283 - -
Vvi13g1274 1110 PRINTS Disease resistance protein signature 196 211 - -
Vvi13g1274 1110 PRINTS Disease resistance protein signature 991 1007 - -
Vvi13g1274 1110 PRINTS Disease resistance protein signature 365 379 - -
Vvi13g1274 1110 Gene3D - 156 322 IPR027417 -
Vvi13g1274 1110 FunFam Probable disease resistance protein At1g61300 155 323 - -
Vvi13g1274 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 428 IPR027417 -
Vvi13g1274 1110 Pfam Rx N-terminal domain 5 90 IPR041118 -
Vvi13g1274 1110 PANTHER DISEASE RESISTANCE PROTEIN RP 48 869 IPR044974 GO:0006952
Vvi13g1274 1110 Coils Coil 698 718 - -
Vvi13g1274 1110 Gene3D - 5 125 - -
Vvi13g1274 1110 FunFam Probable disease resistance protein At1g63360 414 503 - -
Vvi13g1274 1110 Gene3D Ribonuclease Inhibitor 963 1093 IPR032675 -
Vvi13g1274 1110 Gene3D Ribonuclease Inhibitor 680 876 IPR032675 -
Vvi13g1274 1110 Gene3D Ribonuclease Inhibitor 516 676 IPR032675 -
Vvi13g1274 1110 Gene3D - 419 503 IPR036388 -
Vvi13g1274 1110 Coils Coil 34 54 - -
Vvi13g1274 1110 Pfam NB-ARC domain 178 394 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1274 Vvi-Chr13 21065788 21069368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1274 969 1080 WRKY Transcription Factor Family AT4G12020 33.929 1.39e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1274 - K15078 vvi:100255136 2169.43