Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1272 ATGGGGTATTTTTCTTGCAGTGCGGAATCTGCTATTTCTACCTCCAGTTCTCAGTTGCCTCAGAAACCCATCAACAGAATCCAGCAGTTTCAGTATAGTGATCTTGAGGCTGCCACCAATGGGTTTTCTGAGCAGAAGCTACTGGGGAAAGGCAGCCACGGCTGCGTCTACAAGGCCGTCCTCCGGGGCCGCCTCGTCGCCGTGAAGAAGCCCTCCCGCGGCAGTGGGGCTGGAGTCTCGCCTCGGGTGGCTACGTCTTCCTCGTCAACCAACGAGGTTGAGAACGAAATCGAGATTCTGTCGAAAATTCAGAGCCCAAGGCTGGTGAATTTGGTGGGTTTTACGAATGATTCCAAGCAGCGGCTTCTGGTGGTTGAATTCATGAGCAATGGTACGCTCTATGATGTTCTTCATTCCAATTCTCGGACCCCCAATTGGGGTCGGAGGATTCGATTAGCACTGCAGACTGCTAAGGCCATAGACACCCTTCATTCATCAGTTCCGCCGGTGATTCATAGGGATATCAAGTCTGCAAACGTGTTGATTGACAGGAATTTCAATGCCCGGTTGGGTGATTTCGGGCTGGCGCTGCGGTGCCATGTTGATGATTATCGGCTGAGATCAACCCCACCTGCAGGCACAATGGGGTATCTTGATCCATGCTATGTGACCCCAGATAATTTGAGTACTAAAACTGATGTTTTCAGTTTTGGGATACTGCTGTTGGAGATTATTAGTGGTAGGAAGGCCATAGATGTGGGGCATTCGCCGCCTTCCATTGTGGATTGGGCTATTCCATTGATAAGGAAAGGGAAGCTTCTTGCTATATATGATCCGACGATTGCACCTCCGAAGGAACCTTTTGTGAGGAAGCAGTTGGCGGTGATTGCAGCGAAGTGTGTGAGGTCTTGTAGGGAGAGGAGGCCGTCGATGAAAGAGGTTGTTGAATGGCTTGGTGGGTTGAGTAAGCTGGTTCCTCTGCATACATGGAATGGTTTTAATAATCCATGTTTGATGGTGGAGACAATGGGGTGCCCTGTTGAAGCATCAAAGATGGATGGTGTTGAAGGAGGGAATATGGATGGTATGGATGCTAAATTTGGTAGGACGCCATTGAGGAATTCGCGGAGAGTGTACTCTGATTTGGGGTTCAGGAACAATTTGATGGATCTGATGGCTGGAACTGATGGTGAGTCTGAATTTCGAGGGGAGGCTGAGGGGTTTGGACCTATGTCAAAGTCAGTGAATTGGGGTTCTAGTTTTAGATTTGATAGGGGGAGTAGTCAGTCTCGGACTCGTGGTAATGATAAGGGTGGTCTCTTTCGCTTAAGGCGAAACCTTTCTGCAGGAGAGGGTTCAGAAATATTCTCAAGGAGAGATCAATCAAGTTTTAGTGCTAGTAAAGCCAGCCATATCTGA 1419 0.4884 MGYFSCSAESAISTSSSQLPQKPINRIQQFQYSDLEAATNGFSEQKLLGKGSHGCVYKAVLRGRLVAVKKPSRGSGAGVSPRVATSSSSTNEVENEIEILSKIQSPRLVNLVGFTNDSKQRLLVVEFMSNGTLYDVLHSNSRTPNWGRRIRLALQTAKAIDTLHSSVPPVIHRDIKSANVLIDRNFNARLGDFGLALRCHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDVGHSPPSIVDWAIPLIRKGKLLAIYDPTIAPPKEPFVRKQLAVIAAKCVRSCRERRPSMKEVVEWLGGLSKLVPLHTWNGFNNPCLMVETMGCPVEASKMDGVEGGNMDGMDAKFGRTPLRNSRRVYSDLGFRNNLMDLMAGTDGESEFRGEAEGFGPMSKSVNWGSSFRFDRGSSQSRTRGNDKGGLFRLRRNLSAGEGSEIFSRRDQSSFSASKASHI* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1272 472 FunFam Serine/threonine-protein kinase-like protein At1g28390 11 127 - -
Vvi13g1272 472 PANTHER OS01G0253100 PROTEIN 22 322 - -
Vvi13g1272 472 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Vvi13g1272 472 SUPERFAMILY Protein kinase-like (PK-like) 18 318 IPR011009 -
Vvi13g1272 472 FunFam Serine/threonine-protein kinase-like protein 128 331 - -
Vvi13g1272 472 ProSiteProfiles Protein kinase domain profile. 42 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1272 472 Gene3D Phosphorylase Kinase; domain 1 12 127 - -
Vvi13g1272 472 Pfam Protein kinase domain 43 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1272 472 SMART serkin_6 42 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g1272 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Vvi13g1272 472 Gene3D Transferase(Phosphotransferase) domain 1 128 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1272 Vvi-Chr13 21057381 21058799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1272 26 318 Receptor kinase-like Gene Family AT3G59420 44.147 1.63e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi13g1272 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1272 - - vvi:100249988 934.095