Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1267 ATGGGACGTGGTAAGATTGAGATAAAGAAGATCGAGAATGCTAATAGCAGACAAGTGACATTCTCCAAACGCCGTGTTGGGCTGCTCAAGAAGGCTTCCGAACTGGCGATTTTGTGCGATGCTCAAGTTGGTGTTATTATTTTCTCAAATACCGGCAAACTTTTTGAGTTTTCCAGTACTAGCATGAAGCGAATAATTTCAAGATACAACAAGTTAGATTCATCAGAGGGTGCTCTAGTAGAATACAAGGCAGAGGAGCCTAAAGAGGTGGACATTCTGAAAGATGAAATTCGAAAGCTACAAACGAGACAGTTACAGCTGTTGGGTAAGGACCTATCCGGCTTGAGCTTAAAAGAGTTACAAAATCTAGAACAGCAATTAAATGAAAGTTTATTATCAGTCAAAGAGAGGAAGGAGCAAGTACTGATGGAGCAGCTTGAGCAATCGAGAGTACAGGAACAGCGAGCTGTACTGGAGAATGAGACTTTGCGAAGACAGGTTGAGGAGCTTCGAGTTGAGAGGGAAGAATCAGATACTACCTTGCAGTTAGGGCTTCCCACTGAGATTAGTCGCAAGAGGAAGGCACCTGCCAAGATGGAAACCCGCTCCAACAACTCTGGCAGTTAA 627 0.437 MGRGKIEIKKIENANSRQVTFSKRRVGLLKKASELAILCDAQVGVIIFSNTGKLFEFSSTSMKRIISRYNKLDSSEGALVEYKAEEPKEVDILKDEIRKLQTRQLQLLGKDLSGLSLKELQNLEQQLNESLLSVKERKEQVLMEQLEQSRVQEQRAVLENETLRRQVEELRVEREESDTTLQLGLPTEISRKRKAPAKMETRSNNSGS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1267 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi13g1267 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi13g1267 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi13g1267 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi13g1267 208 Coils Coil 117 140 - -
Vvi13g1267 208 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Vvi13g1267 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi13g1267 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi13g1267 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Vvi13g1267 208 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vvi13g1267 208 Pfam K-box region 87 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi13g1267 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi13g1267 208 MobiDBLite consensus disorder prediction 170 208 - -
Vvi13g1267 208 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi13g1267 208 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Vvi13g1267 208 Coils Coil 153 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1267 Vvi-Chr13 20980299 20988777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1267 1 206 MADS-box Gene Family AT5G13790 53.556 1.77e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi13g1267 K-box 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1267 - - vvi:100253397 337.806