Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1264 ATGGGCGACAAGTCTTGTTGTTGGTTAGTGTTCTTCTTGTTCATTTTTTCAAGCTTCGTAGAACAAAGCCATGGCAGGGTCAGGAAGCAGACAGAGCTACTGAAACTTCTCCAAAAGGCCAAGATGCAAGGAAATTCAGGCATAGACACCAGCCTTTTTGAAGTGAATGAAATTAAATCTGAAGCTGAGAGTTATAAGATTCTTCCACAGAAGGGAATGAAGGAGAAAGATAGGATTGAGAGGTTGCCTGGACAACCACATGTTGGGTTCAGCCAGTATGGTGGGTATGTCACCATTGATGAATCCAAGGGTGAAGCTTTTTACTATTACTTTGTTGAAGCACCGACTTCTAGGGAGTCTTTGCCTCTTCTTCTCTGGTTTAATGGTGGTCCTGGTTGTTCTTCTTTGGCTTATGGAGCAATGCAAGAGCTCGGCCCATTCAGGGTTCATAGCGATGGCAAAACTCTCTACAGAAACCAATATGCATGGAACAAGGTTGCAAATGTATTGTTCTTGGAGTCACCTGCTGGAGTAGGGTTCTCATACTCAAACACAACATCCGACAATCAGAGTGGCGGAGACCGGAAAACAGCCAACGAAAACTATGCCTTTCTGGTGAACTGGCTGGAGAGGTTTCCTGAGTACAAGAAGAGAGATTTCTACATCTCTGGTGAAAGCTATGCTGGGCATTATGTGCCTCAACTTGCACATACCATTCTTCATCATAACAAGAAGGCAAATGGGCCCATCATCAACCTCAAAGGGATCATTATCGGAAACGCAGTGATCGATGATGAAGCGGATGACATTGGAAGGTACCAGTACCTTGGGAGTCATGCTCTTGTTTCAGAGAAAACTATACACCAAATGGAGAAACACTGTAATTTCTCCCCCGGAGCCACCAGCCAGAGCAAGGAGTGTACAGAAGCTGTTGATGAAGTTCATAGTAATATTGACGTTATCGATATCTACAACATCTACTCCCCATTATGTTTCAACACCATTCTCACAGCCAAGCCCAAGAAAGTAACACCTGAATTCGATCCATGCAGCGATTACTACGTGTCTGCTTATCTGAATAGGGCTGATGTTCAGAAGGCCCTCCATGCCAATGTGACCAAGCTCAAGTATGAGTGGCGACCTTGCAGTGACATTGACAAGAATTGGACAGATAGCCCCTTGACCATCATTCCCCTTCTGCGCGAGTTCATGGCAAATGGGCTTCGTGTATGGGTATTTAGTGGGGATACTGATGGAGATGTGCCAGTAACATCAACCATGGCTTCTATTGGTAAGATGAGGCTCTCTGTAAAGACTCCATGGCACCCTTGGTTCGTTGCTGGGGAGGTTGGTGGGTATACTGAAGTATACAAGGGAGATCTAACATTTGCTACAGTAAGAGGAGCAGGGCACCAAGTGCCAAGTTTTCGGCCCAAGAGAGCTCTTTCACTCATTGTTCATTTCCTTTCTGGCACTCCTCTTCCCAAGCCTTCATCAAAACATTGA 1506 0.4529 MGDKSCCWLVFFLFIFSSFVEQSHGRVRKQTELLKLLQKAKMQGNSGIDTSLFEVNEIKSEAESYKILPQKGMKEKDRIERLPGQPHVGFSQYGGYVTIDESKGEAFYYYFVEAPTSRESLPLLLWFNGGPGCSSLAYGAMQELGPFRVHSDGKTLYRNQYAWNKVANVLFLESPAGVGFSYSNTTSDNQSGGDRKTANENYAFLVNWLERFPEYKKRDFYISGESYAGHYVPQLAHTILHHNKKANGPIINLKGIIIGNAVIDDEADDIGRYQYLGSHALVSEKTIHQMEKHCNFSPGATSQSKECTEAVDEVHSNIDVIDIYNIYSPLCFNTILTAKPKKVTPEFDPCSDYYVSAYLNRADVQKALHANVTKLKYEWRPCSDIDKNWTDSPLTIIPLLREFMANGLRVWVFSGDTDGDVPVTSTMASIGKMRLSVKTPWHPWFVAGEVGGYTEVYKGDLTFATVRGAGHQVPSFRPKRALSLIVHFLSGTPLPKPSSKH* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1264 501 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 78 478 IPR001563 GO:0004185|GO:0006508
Vvi13g1264 501 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Vvi13g1264 501 FunFam Carboxypeptidase 396 491 - -
Vvi13g1264 501 Gene3D - 350 385 - -
Vvi13g1264 501 SUPERFAMILY alpha/beta-Hydrolases 76 495 IPR029058 -
Vvi13g1264 501 Pfam Serine carboxypeptidase 84 491 IPR001563 GO:0004185|GO:0006508
Vvi13g1264 501 ProSitePatterns Serine carboxypeptidases, histidine active site. 461 478 IPR033124 GO:0004185
Vvi13g1264 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 461 474 IPR001563 GO:0004185|GO:0006508
Vvi13g1264 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 208 233 IPR001563 GO:0004185|GO:0006508
Vvi13g1264 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Vvi13g1264 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Vvi13g1264 501 Gene3D - 396 491 - -
Vvi13g1264 501 FunFam Carboxypeptidase 73 333 - -
Vvi13g1264 501 Gene3D alpha/beta hydrolase 73 333 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1264 Vvi-Chr13 20955122 20961949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1264 358 494 Calmodulin-binding Proteins AT2G22960 28.467 6.97e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1264 K16297 - vvi:109121421 1026.93