Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1262 ATGGGCAACAAGTCTTCTTGTTGGTTTGTCTTCTTCTTCTTCTTCTTCATTTTTTCAAGCTTTGTAGCACAAAGCCATGGCAGGATCAGGAAGCAGACAGAGCTACTGAACCTTCTCCGAAAGGCCAAGATGCAAGGAAATTCAGGCATAGACACCAGCCTTTTTGAAGTGAATGAAATTGAATCTGAAGCTGAGAGTTATAAGATTCTTCCACAGAAGGGAATGAAGGAGAAAGATAGGATTGAGAGGTTGCCTGGACAACCACATGTTGGGTTCAGCCAGTATGGTGGGTATGTCACCATTGATGAATCCAAGGGTGAAGCTCTTTACTATTACTTTGTTGAAGCACCAACTTCTAAGGAGTATTTGCCTCTTCTTCTCTGGCTTAATGGTGGACCTGGATGTTCTTCTCTGGGCGCTGGAGCAATGGCCGAGCTCGGACCATTTCGGGTCCATAGTGATGGCAAAACTTTGTACAGAAATAGATTTGCATGGAACAAGGCTGCAAATGTGTTGTTCTTGGAGACACCCAGTGGAGTAGGGTTCTCATACTCAAACATATCATACAATTATCGCGGAGACCGAAAAACAGCCGGTGCAAACTATGCCTTTCTAGTGAATTGGCTGGAGAGATTTCCTGAGTACAAGAAGAGGGATTTCTACATTGCTGGTGAAAGCTATGCCGGGCATTTTGTTCCTCAGCTTGCCCATGTTATTCTTCATCATAACAAGAAGGCTAATAGAACCATTATCAACCTCAAAGGGATCACTATTGGAAATGCAGCAATCCATGATGAAACCGATTGGCTTGGAATGTACCAATACTTTGGGAGTCATGCTCTTGTTTCACCAAGAACTACACGCCAAATAGAGAAACACTGTGATTTCTCACCCGGAGTCACCAACCAGAACAAGGAGTGCAATGCCGCTTTTGAGGAAGTCGATCCTAATATTGCTAATATCGGTATCTACAACATTTACGGTCCAGTATGTCTCGATACAAATCTCACAGCCAAGCCCAAAAAAGTTACACCATTGCAATTTGATCCATGCAGTTATGATTACGTGCATGCCTATCTAAATAGGCCTGATGTTCAAGAGGCCTTCCATGCTAATGTGACCAAGCTCAAGTATGACTGGGAAATTTGCAATAATGTTGTCTATAATTGGACAGATAGCGCCTGGTCTATCATTACCCTTCTCCACGAGTTCATGGAAAATGGGCTTCGTGTATGGGTATATAGTGGAGATGTTGATGGAAGAGTACCAGTGACATCAACATTGGCTTCTCTTGCTAAGATGAGGCTCACTGTAAAGACTCCATGGCACCCTTGGTTCCTTCATGGGGAGGTTGGTGGGTATACAGAAGTGTACAAGGGAGATCTAACATTCGCGACAGTAAGAGGAGCAGGGCACCAAGTGCCAAGTTTCCAGCCAAGGAGAGCTCTTTCATTTATCATTCACTTCCTTGCTGGCACACCTCTCCCCAATTGA 1494 0.4411 MGNKSSCWFVFFFFFFIFSSFVAQSHGRIRKQTELLNLLRKAKMQGNSGIDTSLFEVNEIESEAESYKILPQKGMKEKDRIERLPGQPHVGFSQYGGYVTIDESKGEALYYYFVEAPTSKEYLPLLLWLNGGPGCSSLGAGAMAELGPFRVHSDGKTLYRNRFAWNKAANVLFLETPSGVGFSYSNISYNYRGDRKTAGANYAFLVNWLERFPEYKKRDFYIAGESYAGHFVPQLAHVILHHNKKANRTIINLKGITIGNAAIHDETDWLGMYQYFGSHALVSPRTTRQIEKHCDFSPGVTNQNKECNAAFEEVDPNIANIGIYNIYGPVCLDTNLTAKPKKVTPLQFDPCSYDYVHAYLNRPDVQEAFHANVTKLKYDWEICNNVVYNWTDSAWSIITLLHEFMENGLRVWVYSGDVDGRVPVTSTLASLAKMRLTVKTPWHPWFLHGEVGGYTEVYKGDLTFATVRGAGHQVPSFQPRRALSFIIHFLAGTPLPN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1262 497 Pfam Serine carboxypeptidase 86 491 IPR001563 GO:0004185|GO:0006508
Vvi13g1262 497 Gene3D alpha/beta hydrolase 75 332 IPR029058 -
Vvi13g1262 497 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Vvi13g1262 497 ProSitePatterns Serine carboxypeptidases, histidine active site. 462 479 IPR033124 GO:0004185
Vvi13g1262 497 SUPERFAMILY alpha/beta-Hydrolases 82 496 IPR029058 -
Vvi13g1262 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Vvi13g1262 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Vvi13g1262 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Vvi13g1262 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 208 233 IPR001563 GO:0004185|GO:0006508
Vvi13g1262 497 Gene3D - 397 492 - -
Vvi13g1262 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 80 479 IPR001563 GO:0004185|GO:0006508
Vvi13g1262 497 Gene3D - 351 389 - -
Vvi13g1262 497 FunFam Carboxypeptidase 397 492 - -
Vvi13g1262 497 FunFam Carboxypeptidase 75 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1262 Vvi-Chr13 20938716 20948513 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1262 345 495 Calmodulin-binding Proteins AT2G22960 26.490 6.22e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1262 K16297 - vvi:100243146 1006.51