Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1242 ATGACAGCAATTGGAGGAAATTCAGCTGGTCCAAGTGATGCAGTTGTCAATGTGTACATTGATCATGAAAAGAAGTTTGCACTCGTGGAGATGAGAAGTGTTGAACAAGCAAGTAATGCGATGGAATTAGGTGGAATTTTATTGTGCATAACAAGCTCAGAGGCAATGTTTTCTGATCTTGGACACTTCTTATACACTGCAATTTAG 207 0.3913 MTAIGGNSAGPSDAVVNVYIDHEKKFALVEMRSVEQASNAMELGGILLCITSSEAMFSDLGHFLYTAI* 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1242 68 SUPERFAMILY RNA-binding domain, RBD 13 50 IPR035979 GO:0003676
Vvi13g1242 68 Gene3D - 1 52 IPR012677 -
Vvi13g1242 68 PANTHER RNA-BINDING PROTEIN 1 48 - -
Vvi13g1242 68 Pfam K+ potassium transporter 35 68 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vvi13g1242 68 FunFam - 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1242 Vvi-Chr13 20697384 20697590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1242 36 68 Inorganic Solute Cotransporters AT2G40540 69.697 6.58e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1242 K12837 - vvi:100243034 82.0333