Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1239 ATGGCAGTGGGGGAGATATTTCTATCTGCTGCCTTTCAAATTACTCTTGAAAAATTGGCTTCCCCAATGTCAAAAGAGTTGGAAAAGCGTTTTGGAGATCTAAAAAAACTGACCAGGACTTTGTCCAAAATCCAGGCTGTGCTCAGTGATGCTGAGGCAAGGCAGATCACCAACGCAGCTGTGAAACTGTGGCTAGGTGATGTTGAAGAAGTAGCATATGACGCGGAGGACGTGCTGGAGGAGGTCATGACCGAAGCTTCTCGACTCAAGCTACAAAACCCAGTAAGCTACTTGTCCTCTTTGTCAAGGGATTTTCAGCTTGAAATTAGGTCTAAATTGGAGAAGATTAATGAGAGGTTGGATGAAATAGAAAAGGAAAGAGATGGGCTGGGGTTGAGGGAGATAAGCGGAGAGAAAAGGAATAATAAAAGACCACAGAGTAGTTCTCTAGTTGAAGAATCTAGGGTTTTAGGGAGGGAGGTTGAGAAAGAGGAGATAGTAGAATTATTGGTATCGGATGAATATGGTGGAAGTGATGTTTGTGTTATTCCCATAGTGGGCATGGGAGGCCTGGGCAAGACAACACTTGCCCAACTTGTCTACAATGATGAGAAGGTGACCAAACATTTTGAGCTGAAAATGTGGGTTTGTGTATCTGATGATTTTGATGTTCGTAGAGCTACAAAATCAGTCCTAGATTCTGCTACCGGGAAAAATTTTGATCTCATGGATTTGGACATACTCCAAAGTAAACTCCGGGACATATTAAAGGGGAAGAGGTATCTGCTTGTTCTAGACGATGTGTGGACTGAGAAGAAGAGTGATTGGGATCGTTTGCGTCTTCCTCTAAGAGCAGGGGCAACCGGAAGTAAAATCATAGTAACTACCAGAAGTGGAAGGGTTTCATCGGTTATGGGCACGATGCCCCCTCGTCATTTGGAGGGATTATCAGATGATGACTGTTGGTCACTTTTTAAGCAAATAGCGTTTGAGAATAGGAATGCTGATGCACATCCAGAGCTGGTACGAATAGGAGAGGAAATTCTGAAGAAGTGTCGAGGTTTGCCTTTAGCAGTGAAGACAATTGGGGGGCTGCTGTATTTGGAGACGGATGAATATGAATGGGAAATGATCCTGAAAAGTGATTTATGGGACTTCGAAGAGGATGAAAATGGAATTTTGCCAGCTCTAAGGCTGAGCTATAATCATCTACCAGAACATCTCAAACAGTGTTTTGTCTTTTGCTCTGTATTCCCAAAAGACTACAACTTTGAAAAGGAAACTTTAGTCTTGCTATGGATTGCAGAGGGTTTTGTTCTTGCAAAGGGAAGGAAACACCTGGAAGATTTGGGTTCGGACTATTTTGATGAGCTGTTGTTGAGGTCTTTCTTTCAACGCTCCAAATTCAATTCTTCCAAGTTCTTTGTTATGCATGACTTGGTTCATGATTTGGCACAATATCTAGCAGGGGATTTATGCTTCAGATTGGAGGAGGGTAAGTCGCAAAGCATCTCGGAAAGGGCTAGGCATGCTGCAGTGCTACACAACACGTTCAAGTCAGGGGTCACATTTGAGGCCTTGGGTACCACAACAAATTTACGTACGGTTATACTGTTGCACGGTAATGAAAGGAGTGAGACCCCTAAGGCAATAGTCCTACATGATTTGCTGCCAACCTTGAGATGCTTACGTGTATTGGATTTGAGTCACATTGCTGTGGAAGAAATACCAGATATGGTAGGAAGACTGAAACATTTAAGGTATCTCAACCTCTCCAGTACTCGTATTAAGATGCTGCCTCCATCAGTTTGCACCCTTTATAATCTCCAATCGCTGATTCTTATGAATTGCAACAACCTTAAGGGGTTGCCTAATGACATGAAAAAACTTCTAAATCTGCGGCATCTTAATTTAACTGGATGTTGGCATCTCATATGCATGCCTCCACAGATTGGGGAGCTTACTTGTTTACGAACATTGCATAGATTTGTTGTGGCAAAAGAGAAGGGTTGTGGGATTGGCGAATTGAAGGGCATGACAGAGCTTCGAGCAACACTCATAATCGATAGGCTTGAGGATGTTTCCATGGTTTCAGAGGGCAGAGAGGCGAATTTGAAGAACAAACAATATCTTCGTAGGTTGGAATTGAAATGGAGCCCTGGACATCATATGCCGCATGCAATTGGTGAGGAGCTTCTTGAATGTCTTGAACCTCATGGGAACCTCAAAGAATTGAAGATAGATGTCTATCATGGTGCTAAGTTTCCAAATTGGATGGGATACTCCTTGCTATCTCGCTTAGAAAGGATTGAACTCTCCCAATGTACCTACAGCAGAATCCTCCCGCCCCTTGGACAGCTACCGCTTCTTAAGTATCTCAGCATTGATACAATGAGTGAATTGGAAAGCATTAGTTGTGAGTTTTGTGGTGAAGGTCAGATTCGAGGGTTTCCTTCCTTAGAGAAAATGAAGCTTGAAGACATGAAGAATTTGAAGGAATGGCACGAGATAGAGGAAGGTGACTTCCCTCGCCTTCACGAACTTACCATTAAAAACTCCCCCAATTTTGCTAGCCTTCCAAAGTTTCCATCACTTTGTGACTTGGTTTTAGATGAATGCAATGAGATGATTTTGGGGTCAGTGCAGTTCCTCTCATCTCTATCCTCATTGAAAATTTCGAATTTCCGAAGACTGGCTTTATTACCTGAGGGCCTTCTACAGCATCTAAATTCACTAAAAGAACTAAGAATTCAGAATTTTTACAGGCTTGAGGCGTTGAAAAAGGAGGTAGGCTTACAGGATCTCGTGTCTCTCCAACGTTTTGAAATTTTATCGTGTCCCAAGCTAGTGTCGCTTCCAGAAGAAGGGTTATCATCTGCACTTCGATATCTCTCCCTCTGTGTATGCAACAGTTTGCAGTCCCTGCCAAAAGGACTCGAGAATCTGTCCTCTCTTGAAGAATTGAGCATTTCCAAGTGTCCTAAGCTTGTGACTTTCCCTGAAGAAAAGTTACCAAGCTCACTCAAACTGTTGAGAATTTCAGCTTGTGCCAACCTGGTATCACTACCTAAGAGACTTAATGAACTCTCAGTTCTTCAACATTTGGCAATAGACTCCTGCCACGCACTAAGATCCTTGCCAGAGGAAGGATTGCCAGCCTCAGTTCGATCATTATCTATTCAAAGATCTCAATTGTTGGAGAAAAGGTGCGAAGAAGGCGGTGAAGACTGGAATAAGATAGCTCATATCCCTGACAGATACATTACAAGATTTTAA 3276 0.4277 MAVGEIFLSAAFQITLEKLASPMSKELEKRFGDLKKLTRTLSKIQAVLSDAEARQITNAAVKLWLGDVEEVAYDAEDVLEEVMTEASRLKLQNPVSYLSSLSRDFQLEIRSKLEKINERLDEIEKERDGLGLREISGEKRNNKRPQSSSLVEESRVLGREVEKEEIVELLVSDEYGGSDVCVIPIVGMGGLGKTTLAQLVYNDEKVTKHFELKMWVCVSDDFDVRRATKSVLDSATGKNFDLMDLDILQSKLRDILKGKRYLLVLDDVWTEKKSDWDRLRLPLRAGATGSKIIVTTRSGRVSSVMGTMPPRHLEGLSDDDCWSLFKQIAFENRNADAHPELVRIGEEILKKCRGLPLAVKTIGGLLYLETDEYEWEMILKSDLWDFEEDENGILPALRLSYNHLPEHLKQCFVFCSVFPKDYNFEKETLVLLWIAEGFVLAKGRKHLEDLGSDYFDELLLRSFFQRSKFNSSKFFVMHDLVHDLAQYLAGDLCFRLEEGKSQSISERARHAAVLHNTFKSGVTFEALGTTTNLRTVILLHGNERSETPKAIVLHDLLPTLRCLRVLDLSHIAVEEIPDMVGRLKHLRYLNLSSTRIKMLPPSVCTLYNLQSLILMNCNNLKGLPNDMKKLLNLRHLNLTGCWHLICMPPQIGELTCLRTLHRFVVAKEKGCGIGELKGMTELRATLIIDRLEDVSMVSEGREANLKNKQYLRRLELKWSPGHHMPHAIGEELLECLEPHGNLKELKIDVYHGAKFPNWMGYSLLSRLERIELSQCTYSRILPPLGQLPLLKYLSIDTMSELESISCEFCGEGQIRGFPSLEKMKLEDMKNLKEWHEIEEGDFPRLHELTIKNSPNFASLPKFPSLCDLVLDECNEMILGSVQFLSSLSSLKISNFRRLALLPEGLLQHLNSLKELRIQNFYRLEALKKEVGLQDLVSLQRFEILSCPKLVSLPEEGLSSALRYLSLCVCNSLQSLPKGLENLSSLEELSISKCPKLVTFPEEKLPSSLKLLRISACANLVSLPKRLNELSVLQHLAIDSCHALRSLPEEGLPASVRSLSIQRSQLLEKRCEEGGEDWNKIAHIPDRYITRF* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1239 1091 SUPERFAMILY RNI-like 817 1066 - -
Vvi13g1239 1091 Gene3D - 315 405 IPR042197 -
Vvi13g1239 1091 FunFam Probable disease resistance protein At1g63360 401 487 - -
Vvi13g1239 1091 Pfam Rx N-terminal domain 7 94 IPR041118 -
Vvi13g1239 1091 PANTHER DISEASE RESISTANCE PROTEIN RP 34 857 IPR044974 GO:0006952
Vvi13g1239 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 415 IPR027417 -
Vvi13g1239 1091 Gene3D Ribonuclease Inhibitor 677 867 IPR032675 -
Vvi13g1239 1091 Gene3D Ribonuclease Inhibitor 513 676 IPR032675 -
Vvi13g1239 1091 Gene3D - 406 487 IPR036388 -
Vvi13g1239 1091 Gene3D - 137 308 IPR027417 -
Vvi13g1239 1091 Coils Coil 106 133 - -
Vvi13g1239 1091 Pfam NB-ARC domain 161 401 IPR002182 GO:0043531
Vvi13g1239 1091 PRINTS Disease resistance protein signature 255 269 - -
Vvi13g1239 1091 PRINTS Disease resistance protein signature 182 197 - -
Vvi13g1239 1091 PRINTS Disease resistance protein signature 352 366 - -
Vvi13g1239 1091 PRINTS Disease resistance protein signature 980 996 - -
Vvi13g1239 1091 SUPERFAMILY L domain-like 476 866 - -
Vvi13g1239 1091 Gene3D Ribonuclease Inhibitor 875 1069 IPR032675 -
Vvi13g1239 1091 FunFam Probable disease resistance protein At1g61300 138 310 - -
Vvi13g1239 1091 Coils Coil 34 54 - -
Vvi13g1239 1091 Gene3D - 11 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1239 Vvi-Chr13 20572744 20576019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1239 179 835 WRKY Transcription Factor Family AT5G45050 22.869 1.12e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1239 - - vvi:100253197 2139