Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1237 ATGGCAGTGGGGGAGATATTTCTATCCGCTGCCTTTCAGATTACTCTTGAAAAATTGGCTTCCCCAATGTCAAAAGAGTTGGAAAAGAGTTTCGGAGATCTAAAAAAATTGACCTGGACTTTGTCCAAAATCCAGGCTGTGCTCCGTGATGCTGAGGCAAGGCAGATCACCAACGCAGCTGTGAAGCTGTGGCTAAGTGATGTTGAAGAAGTAGCAGATGACGCGGAGGACGTGCTGGATGAGGTCATGACCGAAGCTTTTCGATTCAAGCAACAAAACCCAGTAGGCAATTTTTCCTCTTTGTCAAGGGATTTTCATTTTGAAATTGGGTCTAAATTGGAGAAGATTAATATGAGGTTGGATGAAATAGCAAAGAAAGGAGATGAGCTGGGGTTGAAGGAGAGAAGCGGAGAGAAAGGGCATAATGCAAGACCACCGAGTAGTTCTCTAGTTGATGAATCTAGTGTTTTTGGCAGGGAGGTTGAGAAAGAGGAGATACTAGAATTATTGGTATCTGATGAATATGGTGGAAGTGATGTTTGTGTTATTCCCATAGTAGGCATGGGAGGCCTGGGCAAGACAACACTTGCCCAACTTGTCTACAATGATGAGAAGGTGACCAAACATTTTGAGCTGAAAATGTGGGTTTGTGTATCTGATGATTTTGATGTTCGTAGAGCTACAAAATCAGTCCTAGATTCTGCTACCGGGAAAAATTTTGATCTCATGGATTTGGACATACTCCAAAGTAAACTCCGTGACATATTAAAGGGGAAGAGGTATCTGCTTGTTCTAGACGATGTGTGGACTGAGAAGAAGAGTGATTGGGATCGCTTGCGTCTTCCTCTAAGAGCAGGGGCAACCGGAAGTAAAATCATAGTAACTACCAGAAGTGGAAGGGTTTCATCGGTTATGGGCACGATGCCCCCTCGTCATTTGGAGGGATTATCAGACGATGACTGTTGGTCACTTTTTAAGCAAATAGCGTTTGAGAATGGGAATGCTGATGCACATCCAGAACTGGTACGAATAGGAAAGGAAATTCTGAAGAAGTGTCGAGGTTTGCCTTTAGCAGTGAAGACAATTGGGGGGCTGCTGTATTTGGAGACGGAAGAATATGAATGGGAAATGATCTTGAAAAGTGATTTATGGGACTTCGAAGAGGATGAAAATGAAATTTTGCCAGCTCTAAGGCTGAGCTATAATCATCTCCCAGAACATCTCAAACAGTGTTTTGTCTTTTGCTCTGTATTCCCAAAAGACTACAACTTTGAAAAGGAAACTTTAGTCTTGCTATGGATTGCGGAGGGTTTTGTCCTTGCAAAGGGAAGGAAACACCTGGAAGATTTGGGTTCGGACTATTTTGATGAGCTGTTGTTGAGGTCTTTCTTTCAACGCTCCAAAATCAATTCTTCCAAGTTCTTTGTTATGCATGACTTGGTTCATGATTTGGCACAATATCTAGCAGGGGATTTGTGCTTCAGATTGGAGGAGGGTAAGTCGCAAAGCATCTCGGAAAGGGCTAGGCATGCTGCAGTGCTACACAACACGTTCAAGTCAGGGGTCACATTTGAGGCCTTGGGTACCACAACAAATTTACGTACGGTTATACTGCTGCACGGTAATGAAAGGAGTGAGACCCCTAAGGCAATAGTCCTACATGATTTGCTGCCAAGCTTGAGATGCTTACGTGTATTGGATTTGAGTCACATTGCTGTTGAAGAAATACCAGATATGGTAGGAAGACTGAAACATTTAAGGTATCTCAACCTCTCCAGTACTCGTATTAAGATGCTGCCTCCATCAGTTTGCACCCTTTATAATCTCCAATCGCTGATTCTTATGAATTGCAACAACCTTAAGGGGTTGCCTATTGACATGAAAAAACTTCTAAATCTGCGGCATCTTAATTTAACTGGATGTTGGCATCTCATATGCATGCCTCCACAGATTGGGGAGCTTACTTGTTTACGAACATTGCATAGATTTTTTGTGGCAAAAGAGAAGGGTTGTGGGATTGGCGAATTGAAGGGCATGACAGAGCTTCGAGCAACACTCATAATCGATAGGCTTGAGGATGTTTCCATGGTTTCAGAGGGCAGGGAGGCGAATTTGAAGAACAAACAATATCTTCGTAGGTTGGAATTGAAATGGAGCCCTGGACATCATATGCCGCATGCAACTGGTGAGGAGCTTCTTGAATGTCTTGAACCTCATGGGAACCTCAAAGAATTGAAGATCGATGTCTATCATGGTGCTAAGTTTCCAAATTGGATGGGATACTCCTTGCTACCTCGCTTAGAAAGGATCGAACTCTCCCAATGTACCTACAGCAGAATCCTCCCGCCCCTTGGACAGCTACCGCTTCTTAAGTATCTCAGCATTGATACAATGAGTGAATTGGAAAGCATTAGTTGTGAGTTTTGTGGTGAAGGTCAGATTCGAGGGTTTCCTTCCTTAGAGAAAATGAAGCTTGAAGACATGAAGAATTTGAAGGAATGGCATGAGATAGAGGATGGTGACTTCCCTCGCCTTCACGAACTTACCATTAAAAACTCCCCCAATTTTGCTAGCCTTCCAAAGTTTCCATCACTTTGTGACTTGGTTTTAGATGAATGCAATGAGATGATTTTGGGGTCAGTGCAGTTCCTCTCATCTCTATCCTCATTGAAAATTTCAAATTTCCGAAGACTGGCTTTATTACCTGAAGGCCTTCTACAGCATCTAAATTCACTAAAAGAACTAAGAATTCAGAATTTTTACGGGCTTGAGGCGTTGAAAAAGGAGGTAGGCTTACAGGATCTCGTGTCTCTCCAACGTTTTGAAATTTTATCGTGTCCAAAGCTAGTGTCGCTTCCAGAAGAAGGGTTATCATCTGCACTTCGATATCTCTCCCTCTGTGTATGCAACAGTTTGCAGTCCCTGCCAAAAGGACTCGAGAATCTGTCCTCCCTTGAAGAATTGAGCATTTCCAAGTGTCCTAAGCTTGTGACTTTCCCTGAAGAAAAGTTACCAAGCTCACTCAAACTGTTGAGAATTTCAGCTTCCAACCTGGTATCACTACCTAAGAGACTTAATGAACTCTCAGTTCTTCAACATTTGGCAATAGACTCCTGCCACGCACTAAGATCCTTGCCAGAGGAAGGATTGCCAGCCTCAGTTTGA 3165 0.4303 MAVGEIFLSAAFQITLEKLASPMSKELEKSFGDLKKLTWTLSKIQAVLRDAEARQITNAAVKLWLSDVEEVADDAEDVLDEVMTEAFRFKQQNPVGNFSSLSRDFHFEIGSKLEKINMRLDEIAKKGDELGLKERSGEKGHNARPPSSSLVDESSVFGREVEKEEILELLVSDEYGGSDVCVIPIVGMGGLGKTTLAQLVYNDEKVTKHFELKMWVCVSDDFDVRRATKSVLDSATGKNFDLMDLDILQSKLRDILKGKRYLLVLDDVWTEKKSDWDRLRLPLRAGATGSKIIVTTRSGRVSSVMGTMPPRHLEGLSDDDCWSLFKQIAFENGNADAHPELVRIGKEILKKCRGLPLAVKTIGGLLYLETEEYEWEMILKSDLWDFEEDENEILPALRLSYNHLPEHLKQCFVFCSVFPKDYNFEKETLVLLWIAEGFVLAKGRKHLEDLGSDYFDELLLRSFFQRSKINSSKFFVMHDLVHDLAQYLAGDLCFRLEEGKSQSISERARHAAVLHNTFKSGVTFEALGTTTNLRTVILLHGNERSETPKAIVLHDLLPSLRCLRVLDLSHIAVEEIPDMVGRLKHLRYLNLSSTRIKMLPPSVCTLYNLQSLILMNCNNLKGLPIDMKKLLNLRHLNLTGCWHLICMPPQIGELTCLRTLHRFFVAKEKGCGIGELKGMTELRATLIIDRLEDVSMVSEGREANLKNKQYLRRLELKWSPGHHMPHATGEELLECLEPHGNLKELKIDVYHGAKFPNWMGYSLLPRLERIELSQCTYSRILPPLGQLPLLKYLSIDTMSELESISCEFCGEGQIRGFPSLEKMKLEDMKNLKEWHEIEDGDFPRLHELTIKNSPNFASLPKFPSLCDLVLDECNEMILGSVQFLSSLSSLKISNFRRLALLPEGLLQHLNSLKELRIQNFYGLEALKKEVGLQDLVSLQRFEILSCPKLVSLPEEGLSSALRYLSLCVCNSLQSLPKGLENLSSLEELSISKCPKLVTFPEEKLPSSLKLLRISASNLVSLPKRLNELSVLQHLAIDSCHALRSLPEEGLPASV* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1237 1054 Coils Coil 65 85 - -
Vvi13g1237 1054 Pfam NB-ARC domain 161 402 IPR002182 GO:0043531
Vvi13g1237 1054 FunFam Probable disease resistance protein At1g63360 401 487 - -
Vvi13g1237 1054 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 415 IPR027417 -
Vvi13g1237 1054 PRINTS Disease resistance protein signature 255 269 - -
Vvi13g1237 1054 PRINTS Disease resistance protein signature 980 996 - -
Vvi13g1237 1054 PRINTS Disease resistance protein signature 352 366 - -
Vvi13g1237 1054 PRINTS Disease resistance protein signature 182 197 - -
Vvi13g1237 1054 Gene3D - 406 487 IPR036388 -
Vvi13g1237 1054 Gene3D - 142 308 IPR027417 -
Vvi13g1237 1054 SUPERFAMILY RNI-like 818 1044 - -
Vvi13g1237 1054 Gene3D - 315 405 IPR042197 -
Vvi13g1237 1054 MobiDBLite consensus disorder prediction 131 154 - -
Vvi13g1237 1054 Gene3D Ribonuclease Inhibitor 509 861 IPR032675 -
Vvi13g1237 1054 Gene3D Ribonuclease Inhibitor 862 957 IPR032675 -
Vvi13g1237 1054 Gene3D Ribonuclease Inhibitor 958 1052 IPR032675 -
Vvi13g1237 1054 Pfam Rx N-terminal domain 7 91 IPR041118 -
Vvi13g1237 1054 FunFam Probable disease resistance protein At1g61300 141 310 - -
Vvi13g1237 1054 Gene3D - 11 124 - -
Vvi13g1237 1054 Coils Coil 34 54 - -
Vvi13g1237 1054 PANTHER DISEASE RESISTANCE PROTEIN RP 34 845 IPR044974 GO:0006952
Vvi13g1237 1054 SUPERFAMILY L domain-like 476 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1237 Vvi-Chr13 20564535 20567699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1237 179 835 WRKY Transcription Factor Family AT5G45050 22.760 4.11e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1237 - - vvi:100853082 2057.34