Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1232 ATGCTGTCAGATGAAGCAACCCAGGTCGATAAAGTTTCTATCATTTCCATAGTCGGCATGGGCGGGATTGGCAAGACAACCCTCGCTCAGATCATCTACAATGACGGCAGGGTGGAGAATCGTTTTGAAAAGAGAGTTTGGGTTTGTGTTTCGGATGATTTTGATGTTGTAGGGATAACTAAAGCAATTCTCGAGTCCATCACAAAATGTCCATGTGAATTTAAAACCTTGGAATCGCTTCAAGAAAAATTGAAGAATGAAATGAAGGAGAAAAGATTTTTCCTTGTTCTAGATGACGTATGGAACGAGAATCTCAACCACTGGGATGTCCTACAAGCTCCTTTTTATGTCGGAGCACAAGGCAGCGTGGTCTTAGTAACAACTCGCAATGAAAATGTGGCCTCAATTATGCGAACAAGGCCTTCTTATCAGCTTGGTCAACTAACTGATGAACAATGTTGGTTATTGTTCTCACAGCAGGCCTTCAAAAATCTAAATTCAGATGCATGCCAAAACTTGGAATCGATTGGTAGGAAGATAGCAAAAAAATGCAAAGGTTTGCCTTTGGCAGTGAAGACTCTTGCAGGTTTATTACGCTCTAAACAAGATAACACTGCTTGGAATGAAGTGTTAAACAATGAAATATGGGATTTGCCAAATGAGCGAAATAGTATTCTTCCTGCTTTGAATTTGAGTTATTATTATCTCCCTACAACATTGAAGCGATGTTTTGCGTATTGTTCCATATTCCCCAAGGACTATGTGTTTGAAAGAGAGAAGTTAGTATTGTTATGGATGGCTGAAGGCTTCTTAGATGGCTCCAAAAGAGGGGAAACTGTAGAAGAGTTCGGTAGCATATGTTTCGATAATCTATTGTCAAGGTCGTTCTTTCAACAATACCATGACAATGATTCTCAATTTGTGATGCATGATCTGATTCATGATTTGGCACAATTTATATCAGAAAAATTTTGTTTTAGATTGGAGGTCTCACATTGTTTGTTGTCAACATTGAGGTGTTTGCGGGTTTTGTCTTTGACTTACTATGACATTGAAGAATTGCCCCACTCAATTGAAAATTTGAAACACCTACGCTATCTTGACCTCTCTCATACTCCAATTAGAACACTACCTGGATCAATAACTACTCTTTTCAACTTGCAGACGTTGATACTATCAGAGTGTAGATATCTTCATACAGGATCAAGAGTTGGGGAATTGAGGGACCTTTCACACCTTAGTGGTACACTTGCCATTTTGAAGTTGCAGAATGTGGTGGATGCTAGGGATGCCTTGAAGAGTAATATGAAGGGTAAGGAGTGCCTTGACAAGTTAAGATTGGATTGGGAAGATGATAATGCAATTGCCGGTGATTCACAGGATGCAGCAAGTGTGCTGGAAAAGCTGCAACCTCATAGCAACCTGAAAGAACTCTCCATTGGATGCTACTATGGTGCAAAATTTCCAAGCTGGTTAGGGGAACCTTCATTCATCAACATGGTGCGTCTACAATTCTCTAACTGTAAAAGTTGTGCATCCTTGCCACCGCTTGGACAGCTACCGTCTCTCCAGAACCTCTCCATTGTGAAGAATGATGTTCTGCAAAAGGTGGGGCAGGAGTTTTATGGGAATGGGCCTTCTTCATTTAAGCCATTTGGAAGCCTGCATACTCTGGTGTTCAAGGAGATATCAGTGTGGGAGGAATGGGATTGTTTTGGAGTCGAAGGGGGGGAGTTCCCTAGTCTCAATGAGCTCCGTATTGAGAGTTGTCCAAAGCTGAAAGGGGATTTGCCCAAGCACCTTCCTGTTTTAACAAGTCTGGTAATTTTAGAATGTGGGCAATTGGTGTGTCAGCTTCCAGAGGCACCCTCCATTCAGAAACTGAATTTAAAAGAATGTGATGAGGTAGTGTTGAGAAGTGTTGTCCACCTGCCTTCAATAACTGAGTTGGAAGTGAGTGATATTTGTTCCATACAAGTGGAATTGCCAGCGATTTTGCTTAAGCTCACATCCCTCCGGAAGTTGGTTATCAAGGAATGTCAGAGTCTTTCCTCTCTTCCAGAGATGGGGCTGCCCCCCATGCTTGAAACCCTTCGAATAGAAAAGTGCCGCATTCTAGAGACCCTACCAGAGAGAATGACTCAAAATAATATCAGTCTCCAGAGCCTGTACATAGAAGATTGTGATTCTCTTGCGTCTTTGCCCATCATCTCTTCATTGAAATCACTTGAAATCAGGCAGTGTGGGAAAGTAAAGTTACCCCTTCCTGAGGAGACCACGCACAACTACTACCCTTGGCTTACCTATTTATGTATGTATAAAAGTTGTGATTCTCTCACGTCCTTTCCATTAGCCTTCTTCACAAAGCTTAAGACACTTCATATCTGGAATTGTGAAAATCTGGAGTCCTTTTACATTCCAGATGGACTTCGCAACATGGATCTCACATCTCTCCGAAGGATACAGATCTGGGATTGCCCGAATCTGGTGTCTTTTCCACAAGGAGGATTGCCAGCTTCCAACCTGAGATCCCTTTGGATCTGCAGTTGCATGAAGCTTAAGTCACTGCCCCAACGGATGCACACCCTCCTTACATCGCTTGACGAGTTGTGGATAAGTGAATGTCCAGAAATTGTTTCATTTCCGGAAGGGGGTTTGCCGACTAATCTATCTTCACTTCATATATCGGACTGCTACAAGCTTATGGAATCTCGGAAGGAATGGGGCTTACAAACGCTTCCCTCCCTTAGATATTTGATTATCAGTGGAGGTATAGAAGAAGAGTTGGAGTCATTTTCCGAGGAGTGGCTGCTGCCCTCCACTCTCTTCTCTCTCGAGATTCGTAGTTTTCCATATCTGAAATCCCTGGACAATCTGGGGCTTCAAAACCTCACATCTCTGGGACGTTTCGAGATTGGTAAGTGCGTTAAGTTAAAGTCCTTTCCGAAACAGGGGCTGCCCTCCTCCCTCTCTGTTCTCGAGATTTATAGATGTCCTGTGCTGAGAAAACGGTGCCCAAGGGATAAAGGGAAAGAATGGCGCAAGATTGCTCATATCCCCCGCATAGAAATGGATGGCGAAGTCATGGAGTGA 3093 0.4287 MLSDEATQVDKVSIISIVGMGGIGKTTLAQIIYNDGRVENRFEKRVWVCVSDDFDVVGITKAILESITKCPCEFKTLESLQEKLKNEMKEKRFFLVLDDVWNENLNHWDVLQAPFYVGAQGSVVLVTTRNENVASIMRTRPSYQLGQLTDEQCWLLFSQQAFKNLNSDACQNLESIGRKIAKKCKGLPLAVKTLAGLLRSKQDNTAWNEVLNNEIWDLPNERNSILPALNLSYYYLPTTLKRCFAYCSIFPKDYVFEREKLVLLWMAEGFLDGSKRGETVEEFGSICFDNLLSRSFFQQYHDNDSQFVMHDLIHDLAQFISEKFCFRLEVSHCLLSTLRCLRVLSLTYYDIEELPHSIENLKHLRYLDLSHTPIRTLPGSITTLFNLQTLILSECRYLHTGSRVGELRDLSHLSGTLAILKLQNVVDARDALKSNMKGKECLDKLRLDWEDDNAIAGDSQDAASVLEKLQPHSNLKELSIGCYYGAKFPSWLGEPSFINMVRLQFSNCKSCASLPPLGQLPSLQNLSIVKNDVLQKVGQEFYGNGPSSFKPFGSLHTLVFKEISVWEEWDCFGVEGGEFPSLNELRIESCPKLKGDLPKHLPVLTSLVILECGQLVCQLPEAPSIQKLNLKECDEVVLRSVVHLPSITELEVSDICSIQVELPAILLKLTSLRKLVIKECQSLSSLPEMGLPPMLETLRIEKCRILETLPERMTQNNISLQSLYIEDCDSLASLPIISSLKSLEIRQCGKVKLPLPEETTHNYYPWLTYLCMYKSCDSLTSFPLAFFTKLKTLHIWNCENLESFYIPDGLRNMDLTSLRRIQIWDCPNLVSFPQGGLPASNLRSLWICSCMKLKSLPQRMHTLLTSLDELWISECPEIVSFPEGGLPTNLSSLHISDCYKLMESRKEWGLQTLPSLRYLIISGGIEEELESFSEEWLLPSTLFSLEIRSFPYLKSLDNLGLQNLTSLGRFEIGKCVKLKSFPKQGLPSSLSVLEIYRCPVLRKRCPRDKGKEWRKIAHIPRIEMDGEVME* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1232 1030 Gene3D - 147 231 IPR042197 -
Vvi13g1232 1030 SUPERFAMILY L domain-like 615 999 - -
Vvi13g1232 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 247 IPR027417 -
Vvi13g1232 1030 Gene3D Ribonuclease Inhibitor 326 740 IPR032675 -
Vvi13g1232 1030 PRINTS Disease resistance protein signature 14 29 - -
Vvi13g1232 1030 PRINTS Disease resistance protein signature 87 101 - -
Vvi13g1232 1030 PRINTS Disease resistance protein signature 184 198 - -
Vvi13g1232 1030 PRINTS Disease resistance protein signature 382 398 - -
Vvi13g1232 1030 Gene3D - 1 143 IPR027417 -
Vvi13g1232 1030 Gene3D - 232 319 IPR036388 -
Vvi13g1232 1030 SUPERFAMILY L domain-like 301 633 - -
Vvi13g1232 1030 FunFam Probable disease resistance protein At1g63360 233 319 - -
Vvi13g1232 1030 Gene3D Ribonuclease Inhibitor 741 885 IPR032675 -
Vvi13g1232 1030 Gene3D Ribonuclease Inhibitor 886 1008 IPR032675 -
Vvi13g1232 1030 ProSiteProfiles Leucine-rich repeat profile. 363 384 IPR001611 GO:0005515
Vvi13g1232 1030 PANTHER DISEASE RESISTANCE PROTEIN RP 10 590 IPR044974 GO:0006952
Vvi13g1232 1030 FunFam Probable disease resistance protein At1g61300 4 141 - -
Vvi13g1232 1030 Pfam NB-ARC domain 13 233 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1232 Vvi-Chr13 20532375 20535776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1232 12 320 WRKY Transcription Factor Family AT5G45050 23.780 6.88e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1232 - - vvi:100243064 1641.32