Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1230 ATGCCAGACGTGCAGGTCCTTGTGAATGAATTCATAATCAAGCTAAAAAAACGTAAGGTTGAGGGCTCACAGGCAACAGCAAGGATGACTGCTGAATTGCTCCGCTCAGTCATTTCACAGCAGCGAGTTCCCTACAATAACCAGGCTGGGGCTCTGATCGACGCCATAAAGGCTGTTGGAGAGCAGCTGATTGCTGCCAATCCTGTTGAGCTTGCTGTTGGTAATATTGTGCGGCGGGTTTTGCATATTATTAGGGAGGAGGACCTTTCTCTTGCAACTGCCGCTGTGGCTGGGCTGAATTTATCAGCTGTAAGTGATGATGAAGATGATGGCGAGCGAGAGGACCACCCTGTTTTATCAGCTGCTGCTGTTGCTGCTGCTGCCAGAAGCACTCTGCGTCCCCCTTCTTTACAAACCCTTCTTGAGGACATGCCTGACTCAGCAGCTGTTCCTCAAAGTTCTTCTTCTGGTGGTGATTCTGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCAAGGAGCCGGAAGCTGAAGCATGACATTATTGAGGCAGTTAATGAACTTATTCAAGATATCGCCACTTGCCATGAACAGATTTCTGAGCAAGCAGTGGAGCACATTCATCAAAATGAGGTTATATTAACTTTAGGCCGGTCGAGAACAGTAATGGAATTTCTTTGTGCCGCAAAGGAGAAAAAAAGATCATTCCGGGTATTTGTTGCAGAGGGCGCTCCAAGGTACCAGGGGCATGTGCTTGCAAAAGAATTGGTTGCAAGAGGTTTACAGACCACTCTGATCACTGATTCTGCAGTTTTTGCCATGATTTCTCGTGTGAACATGGTTATAGTTGGAGCTCATGCTGTAATGGCGAATGGTGGGGTTATAGCACCTGTTGGGTTAAATATGGTTGCACTAGCTGCTCAGAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCACTCACAAGTTGTGCCCTTTGTATCCACACAATCCAGAGGTCTTATTGAATGAATTGAAATCCCCATCTGAGCTGCTGGATTTTGGAGAATTCTCAGATTGTATGGACTTTGGAAGTGGCAATGGTTCCCCTCTTCTTCATGTTGTCAATCCTGCATTTGATTATGTGCCACCAAAGCTTGTTAGTCTATTTATCACTGACACAGGGGGACATAACCCATCATACATGTACCGGCTCATTGCGGACTATTACTCTGCTGATGATCTGGTGGTGCAGCGGAGACCTGCATCTGGAAATTGA 1254 0.4625 MPDVQVLVNEFIIKLKKRKVEGSQATARMTAELLRSVISQQRVPYNNQAGALIDAIKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLATAAVAGLNLSAVSDDEDDGEREDHPVLSAAAVAAAARSTLRPPSLQTLLEDMPDSAAVPQSSSSGGDSEGKSKSADKSSRSRKLKHDIIEAVNELIQDIATCHEQISEQAVEHIHQNEVILTLGRSRTVMEFLCAAKEKKRSFRVFVAEGAPRYQGHVLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLAGTHKLCPLYPHNPEVLLNELKSPSELLDFGEFSDCMDFGSGNGSPLLHVVNPAFDYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVQRRPASGN* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1230 417 MobiDBLite consensus disorder prediction 145 175 - -
Vvi13g1230 417 SUPERFAMILY NagB/RpiA/CoA transferase-like 8 406 IPR037171 -
Vvi13g1230 417 Gene3D - 194 401 IPR042529 -
Vvi13g1230 417 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 2 408 - -
Vvi13g1230 417 FunFam translation initiation factor eIF-2B subunit beta 194 402 - -
Vvi13g1230 417 Pfam Initiation factor 2 subunit family 19 391 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1230 Vvi-Chr13 20497561 20506128 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1230 1 409 Eukaryotic Initiation Factors Gene Family AT3G07300 82.238 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1230 K03754 - vvi:100256712 779.63