Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1219 ATGGCATCTGGGAATACATATTTTGATGACATGCGGAGCAAATCTGAGGTTATTGATCCTCCTCAAAGTGAAGATATGATGGAAGTCAGTGAACATGTGAATGATCCAGCTCAAACTACTCTGAAACCTAACGTGACCGTCTCTAGTAGTGTGCGGGAGCTATTAGAGTGTCCTGTGTGCTTAAATGCTATGTACCCTCCCATCCATCAGTGTTCAAATGGTCACACATTGTGTTCTGGATGCAAACCTAGGGTGCATAACCGATGTCCCACTTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCCTTGGAGAAGGTAGCTGCGTCCCTTGAACTTCCATGTAAATATCAGAGTTTTGGGTGCTTGGGCATATATCCTTATTACAGCAAGCTAAAGCATGAATCTCAGTGTGTCTATAGACCCTATAACTGCCCCTATGCTGGATCAGAATGCACAGTCATTGGTGACATTCCTTATCTGGTGGCCCACCTAAAAGATGATCATAAAGTTGACATGCACAATGGCAGTACTTTCAACCATCGCTATGTTAAATCAAATCCTCATGAGGTTGAAAATGCTACTTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTCTGTCTGCATTTTGAAGCCTTCCAGCTTGGAATGGCGCCAGTCTATATAGCATTCTTGAGGTTCATGGGTGATGACAATGAGGCAAAGAACTACAGTTACAGTCTAGAGGTGGGAGGGACTGGCAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATAAGGGACAGCCACAGAAAGGTTCGTGACAGTTTTGATGGACTCATCATCCAGCGCAACATGGCTCTCTTCTTCTCAGGAGGTGATCGGAAGGAATTGAAGTTAAGAGTGACTGGTAGGATTTGGAAGGAACAGTGA 918 0.4477 MASGNTYFDDMRSKSEVIDPPQSEDMMEVSEHVNDPAQTTLKPNVTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGTGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1219 305 SUPERFAMILY TRAF domain-like 110 302 - -
Vvi13g1219 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
Vvi13g1219 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Vvi13g1219 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Vvi13g1219 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Vvi13g1219 305 SUPERFAMILY RING/U-box 49 97 - -
Vvi13g1219 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Vvi13g1219 305 CDD Sina 171 299 - -
Vvi13g1219 305 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi13g1219 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Vvi13g1219 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Vvi13g1219 305 CDD RING-HC_SIAHs 55 93 - -
Vvi13g1219 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 304 - -
Vvi13g1219 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1219 Vvi-Chr13 20389201 20393149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1219 48 305 C3H Transcription Factor Family AT2G41980 79.845 2.51e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1219 K04506 - vvi:100244678 649.818