Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1214 ATGGCTTTTGTTGGAGAGGCTTTTCTATCTGCTTCCATTCAGAAGCTGGTGGACATGTTGGCCTGCCCCGACCTCCGGAAGTTCGCCCGCGAAGAACAAGTCCACGCCGAGCTCAAGAAGTGGGAGGGAATACTGCTGAAAATCCATGCAGTGCTTCATGATGCTGAGGAGAAGCAGATGACTAATCGGTTCGTGCAGATATGGTTAGCCGAGCTCAGAGACTTGGCCTATGATGTTGAAGACATCTTGGACGACTTCGCCACCGAAGCTTTACGGCGCAAGCTGATCACAGATGATCCTCAGCCAAGTACTAGTACGGTACGCAGCCTCATCTCCTCCTTGTCTTCTCGTTTCAATCCAAATGCTTTGGTGTATAATCTCAATATGGGGTCTAAGATAGAGGAGATCACTGCAAGATTACATGAGATTTCTACCCAAAAGGGTGACCTGGATTTGAGAGAGAATGTTGAAGGGAGGTCCAACAGGAAGAGAAAAAGAGTCCCTGAAACAACTTGTCTGGTGGTTGAGTCTCGTGTTTATGGCAGGGAAACTGATAAAGAGGCGATACTTGAAGTGTTGCTGAGGGATGAATTGGTTCATGATAATGAAGTCTGCGTGATTCCTATAGTCGGCATGGGAGGTGTCGGCAAAACTACCCTTGCCCAGCTTGCCTACCACGACGACAGAGTGAAGAATCATTTTGATCTGAGGGCTTGGGTTTGTGTTTCTGATGATTTTGATGTTTTGAGGATAGCAAAAACGCTTCTACAGTCAATTGCTTCTTATGCCCGTGAGATCAATGATCTAAACTTGCTTCAAGTCAAGCTGAAAGAGAAATTGTCTGGAAAGAAGTTTCTGCTTGTTCTAGATGATGTCTGGAACGAGAACTATGACAAATGGGATAGGTTGTGCACCCCTTTACGAGCAGGGGGACCCGGCAGTAAGGTTATCATCACTACTCGCATGGGTGTCGCGTCACTTACCAGAAAGGTTTCGCCTTACCCCCTGCAGGAGCTGTCAAATGATGATTGTCGGGCTGTGTTTGCGCATGCATTGGGAGCAAGGAACTTTGAAGCTCATCCGCACGTGAAAATAATTGGAGAGGAAATGGTGAACAGATGCAGGGGCTTGCCTTTGGTCGCAAAGGCCCTGGGAGGCATCTTGCGAAATGAACTAAACCATGAGGCATGGGACGATATATTGAAGAGTAAGATATGGGATCTACCAGAAGAGAAAAGTGGTGTTCTTCCAGCTCTCAAATTGAGCTATCATCACCTCCCATCTCATCTGAAGCAGTGCTTTGCTTACTGCGCTATTTTTCCCAAGGGATATGAATTCAAAAAGGATGAATTAATCCTTTTATGGATGGGAGAAGGATTTCTGCAGCAAACAAAAGGGAAGAAGCGAATGGAGGACTTAGGTTCCAAATACTTCTCAGAGTTGTTATCAAGGTCATTCTTTCAACAATCAAGTGACATAATGCCGCGATTCATGATGCATGATCTCATCCATGATTTGGCTCAATCTATTGCCGGAAATGTATGTTTCAATTTGGAGGATAAGTTGGAGAATAATGAAAATATTTTTCAAAAGGCTCGCCATTTGTCATTCATTCGTCAGGCCAATGAGATCTTCAAAAAATTTGAAGTTGTCGATAAAGGGAAGTATCTTCGAACTTTTCTAGCTTTACCCATCAGTGTATCATTTATGAAAAGTTTGTCATTCATAACTACGAAGGTGACACATGACCTCTTAATGGAAATGAAATGCTTACGGGTACTATCTTTAAGTGGCTATAAGATGAGTGAGCTACCGAGTTCAATTGATAATTTGAGTCATCTACGATATCTCAATCTATGTCGCTCTTCAATTAAAAGGTTACCTAATTCAGTAGGTCATCTGTATAATTTACAAACCTTAATATTACGAGATTGTTGGAGTCTCACTGAGATGCCTGTGGGGATGGGAAATTTAATCAACCTTCGACATCTTGATATTGCTGGGACAAGTCAATTACAAGAGATGCCCCCACGAATGGGCAGCCTGACAAATTTGCAAACATTGTCTAAGTTTATTGTGGGGAAAGGTAATGGGTCGAGCATACAAGAATTGAAGCACTTGTTGGATCTTCAAGGAGAACTTTCCATTCAAGGATTGCATAATGCGAGAAATACTCGAGATGCAGTGGATGCTTGTTTAAAGAATAAGTGCCACATTGAAGAACTAACAATGGGATGGAGTGGTGATTTTGATGATTCACGAAATGAATTGAATGAAATGCTTGTGCTCGAGTTGCTGCAACCTCAAAGAAATCTGAAAAATCTCACAGTTGAGTTCTATGGAGGACCAAAATTCCCAAGCTGGATAGGGAATCCTTCATTCTCAAAAATGGAGTCCCTGACCCTTAAAAATTGTGGAAAATGCACATCGCTACCGTGTCTTGGACGACTATCTCTACTCAAAGCCTTGCACATTCAAGGAATGTGTAAAGTTAAAACCATAGGTGATGAATTTTTTGGGGAGGTCTCTCTTTTCCAGCCTTTTCCATGCTTGGACACCAACTCTTGTTGTCTTGAAGTCTTGGAGATCAGAAAATGTTCATCCCTCCACCCTCAAGCGGCTTGA 2625 0.4305 MAFVGEAFLSASIQKLVDMLACPDLRKFAREEQVHAELKKWEGILLKIHAVLHDAEEKQMTNRFVQIWLAELRDLAYDVEDILDDFATEALRRKLITDDPQPSTSTVRSLISSLSSRFNPNALVYNLNMGSKIEEITARLHEISTQKGDLDLRENVEGRSNRKRKRVPETTCLVVESRVYGRETDKEAILEVLLRDELVHDNEVCVIPIVGMGGVGKTTLAQLAYHDDRVKNHFDLRAWVCVSDDFDVLRIAKTLLQSIASYAREINDLNLLQVKLKEKLSGKKFLLVLDDVWNENYDKWDRLCTPLRAGGPGSKVIITTRMGVASLTRKVSPYPLQELSNDDCRAVFAHALGARNFEAHPHVKIIGEEMVNRCRGLPLVAKALGGILRNELNHEAWDDILKSKIWDLPEEKSGVLPALKLSYHHLPSHLKQCFAYCAIFPKGYEFKKDELILLWMGEGFLQQTKGKKRMEDLGSKYFSELLSRSFFQQSSDIMPRFMMHDLIHDLAQSIAGNVCFNLEDKLENNENIFQKARHLSFIRQANEIFKKFEVVDKGKYLRTFLALPISVSFMKSLSFITTKVTHDLLMEMKCLRVLSLSGYKMSELPSSIDNLSHLRYLNLCRSSIKRLPNSVGHLYNLQTLILRDCWSLTEMPVGMGNLINLRHLDIAGTSQLQEMPPRMGSLTNLQTLSKFIVGKGNGSSIQELKHLLDLQGELSIQGLHNARNTRDAVDACLKNKCHIEELTMGWSGDFDDSRNELNEMLVLELLQPQRNLKNLTVEFYGGPKFPSWIGNPSFSKMESLTLKNCGKCTSLPCLGRLSLLKALHIQGMCKVKTIGDEFFGEVSLFQPFPCLDTNSCCLEVLEIRKCSSLHPQAA* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1214 874 PRINTS Disease resistance protein signature 374 388 - -
Vvi13g1214 874 PRINTS Disease resistance protein signature 656 672 - -
Vvi13g1214 874 PRINTS Disease resistance protein signature 206 221 - -
Vvi13g1214 874 PRINTS Disease resistance protein signature 279 293 - -
Vvi13g1214 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 437 IPR027417 -
Vvi13g1214 874 Gene3D - 9 122 - -
Vvi13g1214 874 SUPERFAMILY L domain-like 499 844 - -
Vvi13g1214 874 Gene3D - 417 510 IPR036388 -
Vvi13g1214 874 Pfam NB-ARC domain 183 402 IPR002182 GO:0043531
Vvi13g1214 874 Gene3D Ribonuclease Inhibitor 565 871 IPR032675 -
Vvi13g1214 874 FunFam Probable disease resistance protein At1g61300 161 332 - -
Vvi13g1214 874 Gene3D - 159 331 IPR027417 -
Vvi13g1214 874 FunFam Probable disease resistance protein At1g63360 423 509 - -
Vvi13g1214 874 CDD RX-CC_like 5 144 IPR038005 -
Vvi13g1214 874 PANTHER DISEASE RESISTANCE PROTEIN RP 38 867 IPR044974 GO:0006952
Vvi13g1214 874 Pfam Rx N-terminal domain 8 103 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1214 Vvi-Chr13 20292425 20295913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1214 207 834 WRKY Transcription Factor Family AT5G45050 23.916 1.04e-12 70.5