Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1212 ATGGCTGGTATTGTCGGAGAAGCTGTTTTGTCTTGTTTCATCCAGAAGTTGGTTGACATGGTCACCTCCCCGGAGCTGTGGAAGTATGCACGTAAAGAGCAAGTTGATTCTGAGCTGAAAAGGTGCAAGAATATATTGACAAAGATCTGTTTAGTGCTCAATGACGCAGAGGAGAAGCAGATGACAAACCCTCTGGTCAAAATATGGCTGGACGAGCTTAGAGACTTGGCTTACGATGTGGAGGACATCTTGGACGACTTCGCCATCGAAGCTTTGCGAAGCAGCTTGATCATGGCTCAACCCCAACAAGGCATTAGTAAGTTACGAGACATGCTCTCTTCTCTCATTCCGAGTGCTTCTACGTCTAATTCTAGTATGCGTTCCAAGATTAAGGAGATCACTGAAAGATTACAAGAGATTTCAGCCCAAAAGAATGACCTGGATTTACGAGAGATTGCTGGAGGGTGGTGGTCTGATAGAAAGAGAAAGCGAGAGCAAACCACTTCTCTGGTGGTTGAATCCGATGTTTATGGTAGGGAAAAAAATAAAGCGGATATAGTTGACATGTTACTCAAGCACGATCCAAGTAGTGATGATGAAGTCTCCGTAATTCCAATTGTCGGTATGGGAGGTATCGGCAAAACTACTCTGGCTCAGCTTGCCTTCAATGATGATGAAGTGAAGGGCCGTTTTGATTTGAGAGCATGGGTCTGTGTTTCTGATGACTTTGACGTTTCGAAAATAACCAAGACCATTCTACAATCTGTTGATCCGGGAACTCATGATGTCAATGATCTCAATTTGCTTCAGGTCAAATTGAAGGAGAAATTTTCTGGGAAGAAGTTTCTTCTTGTGCTAGACGATGTTTGGAATGAGAATTGTCATGAATGGGATACTTTGTGCATGCCAATGAGAGCTGGGGCACCCGGTAGTAAACTCATCGTGACAACCCGTAATGAAGGTGTCGCAGCAGTTACCAGAACTTGTCCAGCTTATCCCCTACGGGAATTATCAAACAACGATTGTTTGTCTTTATTCACTCAGCAAGCATTGAGGACAAGAAACTTTGATGCCCATCCACACTTGAAAGAAGTCGGTGAGGAAATAGTGAGAAGGTGCAAAGGCTTGCCTTTGGCTGCGAAGGCACTCGGTGGCATGTTGCGCAACCAACTAAGTCGCGATGCATGGGCAAATATATTAACAAGCAGGATATGGGATTTACCGGAAGATAAAAGCCACATTCTTCCCGCTCTCATGTTAAGCTACCATCATCTCCCTTCTCATTTGAAGCAGTGTTTTGCATATTGCTCCATGTTTCCAAAGGACTATGAATTCAACAAGGATGACTTAGTCCTCTTATGGATGGCAGAAGGCTTTTTGCAGAAAACGAAGGAGGCAGCTAGGCCAGAAGACTTAGGTTCTAAATACTTCAATGATTTGTTCTCCAGGTCATTTTTTCAACATTCAAGTCGAAATTCATCCCGATATGTGATGCATGATCTCATCAATGATCTAGCTCAGTCAGTTGCAGGAGAAATATACTTTCATTTGGATGGTGCATGGGAGAATAACAAACAATCCACCATTTCTGAGAAGACTCGTCATTCATCATTCAATCGTCAACACTCTGAGACACAGAGAAAATTTGAACCCTTTCACAAGGTGAAGTGTTTGAGAACATTGGTTGCACTTCCCATGGACCAACCAGTTTTTTCCAGTGGCTACATATCAAGTAAGGTGTTAGATGACCTTTTAAAGGAAGTGAAATATTTACGGGTATTATCTTTAAGTGGCTACAAGATATATGGGTTACCAGATTCAATTGGCAATCTTAAATATTTGCGGTATCTCAATTTGTCCGGGTCTTCCATAAGAAGGTTACCTGATTCAGTATGCCATCTTTACAACTTACAAGCACTGATATTATCTGATTGCAAAGACCTTACGACGTTGCCTGTGGGAATTGGAAACCTAATCAACCTTCGACACCTTCATATCTTTGACACATGGAAATTACAAGAAATGCCTTCTCAAACTGGAAATCTAACAAAGTTGCAAACGTTATCTAAGTTTATTGTGGGCGAAGGTAACAACTTGGGATTAAGAGAATTGAAGAATTTATTTGATCTTCGAGGACAACTTTCAATTTTGGGGTTGCACAATGTGATGAATATTCGAGATGGAAGGGATGCCAATTTAGAGAGTAAGCATGGAATTGAGGAGTTAACAATGGAATGGAGTGATGACTTTGGTGCTTCACGAAATGAAATGCATGAGAGGAATGTTTTGGAGCAGCTACGACCTCATAGAAATCTGAAAAAGCTCACAATTGCATCTTATGGTGGATCAGGATTCCCAAATTGGATGAAGGACCCATCATTCCCAATAATGACACACTTAATTCTCAAGGACTGCAAGAGATGCACATCATTACCCGCGCTTGGCCAAATATCCTCACTCAAAGTCTTGCATATTAAAGGTATGAGTGAAGTTAGAACCATAAATGAGGAGTTTTATGGAGGGATTGTGAAGCCTTTTCCATCCTTGGAGTCTCTAACGTTTGAGGTAATGGCAGAATGGGAATACTGGTTTTGTCCTGATGCAGTTAACGAAGGTGAATTATTTCCATGTCTTCGATTGCTTACAATAAGAGATTGTAGGAAGTTACAACAATTGCCTAATTGCCTACCTTCCCAAGTGAAACTTGACATCTCTTGTTGTCCAAATTTGGGATTTGCTTCTTCAAGATTTGCATCTCTTGGTGAATCCTTTTCAACAAGGGAGTTACCCTCCACCCTTAAGAAACTTGAGATTTGCGGGTGCCCCGACTTGGAGTCCATGTCGGAGAACATGTGCCCCAACAATTCAGCTCTTGACAATTTAGTCCTTGAGGGTTATCCAAATCTGAAAATCCTACCAGAATGCCTTCACAGCCTCAAGAGTCTCCAAATAATTAACTGTGAAGGTCTGGAGTGCTTTCCAGCAAGAGGCTTGTCCACCCCCACCCTCACAAGCCTTCGAATTGAGGGATGTGAGAATCTGAAATCCCTGCCACATCAAATGAGAGACCTCAAATCTCTTAGAGATCTTACCATATTCGGAAACACATTCAACCCCCAGTCCTTACAGAGTGGAGCCGGAGGGAACTTTTCTTTGAAGGAAGCATAA 3168 0.4214 MAGIVGEAVLSCFIQKLVDMVTSPELWKYARKEQVDSELKRCKNILTKICLVLNDAEEKQMTNPLVKIWLDELRDLAYDVEDILDDFAIEALRSSLIMAQPQQGISKLRDMLSSLIPSASTSNSSMRSKIKEITERLQEISAQKNDLDLREIAGGWWSDRKRKREQTTSLVVESDVYGREKNKADIVDMLLKHDPSSDDEVSVIPIVGMGGIGKTTLAQLAFNDDEVKGRFDLRAWVCVSDDFDVSKITKTILQSVDPGTHDVNDLNLLQVKLKEKFSGKKFLLVLDDVWNENCHEWDTLCMPMRAGAPGSKLIVTTRNEGVAAVTRTCPAYPLRELSNNDCLSLFTQQALRTRNFDAHPHLKEVGEEIVRRCKGLPLAAKALGGMLRNQLSRDAWANILTSRIWDLPEDKSHILPALMLSYHHLPSHLKQCFAYCSMFPKDYEFNKDDLVLLWMAEGFLQKTKEAARPEDLGSKYFNDLFSRSFFQHSSRNSSRYVMHDLINDLAQSVAGEIYFHLDGAWENNKQSTISEKTRHSSFNRQHSETQRKFEPFHKVKCLRTLVALPMDQPVFSSGYISSKVLDDLLKEVKYLRVLSLSGYKIYGLPDSIGNLKYLRYLNLSGSSIRRLPDSVCHLYNLQALILSDCKDLTTLPVGIGNLINLRHLHIFDTWKLQEMPSQTGNLTKLQTLSKFIVGEGNNLGLRELKNLFDLRGQLSILGLHNVMNIRDGRDANLESKHGIEELTMEWSDDFGASRNEMHERNVLEQLRPHRNLKKLTIASYGGSGFPNWMKDPSFPIMTHLILKDCKRCTSLPALGQISSLKVLHIKGMSEVRTINEEFYGGIVKPFPSLESLTFEVMAEWEYWFCPDAVNEGELFPCLRLLTIRDCRKLQQLPNCLPSQVKLDISCCPNLGFASSRFASLGESFSTRELPSTLKKLEICGCPDLESMSENMCPNNSALDNLVLEGYPNLKILPECLHSLKSLQIINCEGLECFPARGLSTPTLTSLRIEGCENLKSLPHQMRDLKSLRDLTIFGNTFNPQSLQSGAGGNFSLKEA* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1212 1055 Gene3D - 421 509 IPR036388 -
Vvi13g1212 1055 Gene3D Ribonuclease Inhibitor 974 1046 IPR032675 -
Vvi13g1212 1055 Pfam NB-ARC domain 181 401 IPR002182 GO:0043531
Vvi13g1212 1055 Gene3D Ribonuclease Inhibitor 516 699 IPR032675 -
Vvi13g1212 1055 Gene3D Ribonuclease Inhibitor 700 923 IPR032675 -
Vvi13g1212 1055 FunFam Probable disease resistance protein At1g61300 158 328 - -
Vvi13g1212 1055 Pfam Rx N-terminal domain 9 95 IPR041118 -
Vvi13g1212 1055 Gene3D - 336 420 IPR042197 -
Vvi13g1212 1055 FunFam Probable disease resistance protein At1g63360 422 508 - -
Vvi13g1212 1055 Coils Coil 123 150 - -
Vvi13g1212 1055 Gene3D - 159 329 IPR027417 -
Vvi13g1212 1055 Gene3D - 9 130 - -
Vvi13g1212 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 436 IPR027417 -
Vvi13g1212 1055 SUPERFAMILY L domain-like 497 911 - -
Vvi13g1212 1055 CDD RX-CC_like 6 141 IPR038005 -
Vvi13g1212 1055 PRINTS Disease resistance protein signature 203 218 - -
Vvi13g1212 1055 PRINTS Disease resistance protein signature 373 387 - -
Vvi13g1212 1055 PRINTS Disease resistance protein signature 632 648 - -
Vvi13g1212 1055 PRINTS Disease resistance protein signature 276 290 - -
Vvi13g1212 1055 PANTHER DISEASE RESISTANCE PROTEIN RP 54 887 IPR044974 GO:0006952
Vvi13g1212 1055 Pfam Leucine rich repeat 591 645 IPR001611 GO:0005515
Vvi13g1212 1055 SUPERFAMILY RNI-like 876 1041 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi13g1212 Vvi-Chr13 20234409 20254018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi13g1212 200 854 WRKY Transcription Factor Family AT5G45050 23.729 7.84e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1212 - - vvi:100254846 1768.05